Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1602-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1602-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19197478 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 25380421 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27204859 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 35323297 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 25712094 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 242897 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15690293 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 21158148 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4623512 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 5841615 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 6073752 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g080000 |
| SBS | Chr7 | 4895527 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 4895528 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g059900 |
| SBS | Chr7 | 4895529 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g059900 |
| SBS | Chr7 | 16621904 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 1764393 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2153347 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12618174 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20181199 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 23591951 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g181500 |
| SBS | Chr8 | 23591952 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 15397110 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5944889 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 7553812 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10478133 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 21659546 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 18810140 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13929244 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 21959923 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21962838 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24666678 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g200300 |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2553001 | 2565000 | 11999 | |
| Deletion | Chr3 | 5118093 | 5118344 | 251 | |
| Deletion | Chr6 | 6492441 | 6492457 | 16 | |
| Deletion | Chr11 | 6885897 | 6885906 | 9 | |
| Deletion | Chr5 | 7916344 | 7916345 | 1 | |
| Deletion | Chr1 | 9168832 | 9168834 | 2 | |
| Deletion | Chr10 | 9983862 | 9983863 | 1 | |
| Deletion | Chr11 | 10509647 | 10509648 | 1 | |
| Deletion | Chr12 | 11776795 | 11776797 | 2 | |
| Deletion | Chr1 | 11873686 | 11873688 | 2 | |
| Deletion | Chr9 | 12285234 | 12285235 | 1 | |
| Deletion | Chr1 | 15071053 | 15071059 | 6 | |
| Deletion | Chr3 | 15085865 | 15085867 | 2 | |
| Deletion | Chr2 | 15496469 | 15496480 | 11 | |
| Deletion | Chr5 | 15615903 | 15615909 | 6 | |
| Deletion | Chr2 | 18515363 | 18515366 | 3 | |
| Deletion | Chr2 | 18703220 | 18703232 | 12 | OsKitaake02g184000 |
| Deletion | Chr12 | 21907779 | 21907780 | 1 | |
| Deletion | Chr9 | 22061695 | 22061700 | 5 | |
| Deletion | Chr3 | 22191001 | 22203000 | 11999 | |
| Deletion | Chr4 | 31410001 | 31570000 | 159999 | 20 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 18775659 | 18775662 | 2 | |
| Insertion | Chr8 | 24269613 | 24269616 | 2 | |
| Insertion | Chr12 | 24664892 | 24664895 | 2 |
Inversions: 117
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 305789 | 306064 | OsKitaake01g004100 |
| Inversion | Chr8 | 548343 | 548640 | |
| Inversion | Chr2 | 1024535 | 1024781 | |
| Inversion | Chr10 | 1365255 | 1365585 | |
| Inversion | Chr5 | 1436573 | 1436817 | |
| Inversion | Chr5 | 1802881 | 1803070 | |
| Inversion | Chr2 | 2095947 | 2096108 | OsKitaake02g031550 |
| Inversion | Chr3 | 2189231 | 2189378 | OsKitaake03g031300 |
| Inversion | Chr6 | 2229404 | 2229823 | OsKitaake06g028700 |
| Inversion | Chr2 | 2361790 | 2362099 | OsKitaake02g034700 |
| Inversion | Chr3 | 2440663 | 2440865 | |
| Inversion | Chr3 | 2952121 | 2952524 | OsKitaake03g041600 |
| Inversion | Chr8 | 3027213 | 3027604 | |
| Inversion | Chr6 | 3146723 | 3147005 | OsKitaake06g043900 |
| Inversion | Chr12 | 3153080 | 3153312 | OsKitaake12g045500 |
| Inversion | Chr2 | 3276080 | 3276389 | OsKitaake02g047600 |
| Inversion | Chr5 | 3830949 | 3831131 | OsKitaake05g046000 |
| Inversion | Chr5 | 4366120 | 4366326 | |
| Inversion | Chr1 | 4414238 | 4414368 | OsKitaake01g058900 |
| Inversion | Chr9 | 4547722 | 4548078 | |
| Inversion | Chr3 | 4688941 | 4689401 | OsKitaake03g067900 |
| Inversion | Chr11 | 4941791 | 4942205 | |
| Inversion | Chr6 | 5151809 | 5152265 | OsKitaake06g069000 |
| Inversion | Chr1 | 5291654 | 5291788 | OsKitaake01g068700 |
| Inversion | Chr3 | 5753314 | 5753437 | |
| Inversion | Chr11 | 6009990 | 6010243 | OsKitaake11g073100 |
| Inversion | Chr2 | 6626318 | 6626703 | OsKitaake02g090100 |
| Inversion | Chr6 | 7220968 | 7221246 | OsKitaake06g093100 |
| Inversion | Chr3 | 7696367 | 7696477 | OsKitaake03g106800 |
| Inversion | Chr1 | 7832040 | 7832359 | OsKitaake01g098200 |
| Inversion | Chr4 | 8240697 | 8241139 | OsKitaake04g043000 |
| Inversion | Chr3 | 9766133 | 9766449 | OsKitaake03g133100 |
| Inversion | Chr5 | 9861491 | 9861763 | OsKitaake05g089500 |
| Inversion | Chr5 | 9920932 | 9921105 | OsKitaake05g089600 |
| Inversion | Chr5 | 10189366 | 10189758 | |
| Inversion | Chr1 | 10726013 | 10726209 | |
| Inversion | Chr1 | 11079506 | 11079783 | OsKitaake01g136100 |
| Inversion | Chr1 | 11204297 | 11204778 | OsKitaake01g137600 |
| Inversion | Chr3 | 12255622 | 12255886 | |
| Inversion | Chr4 | 12391827 | 12392285 | |
| Inversion | Chr1 | 12423912 | 12424110 | OsKitaake01g150000 |
| Inversion | Chr3 | 12503125 | 12503331 | 2 |
| Inversion | Chr12 | 12764277 | 12764553 | OsKitaake12g108000 |
| Inversion | Chr5 | 13012264 | 13012436 | |
| Inversion | Chr9 | 13093347 | 13093648 | |
| Inversion | Chr1 | 13116492 | 13116642 | OsKitaake01g155300 |
| Inversion | Chr10 | 13610809 | 13610984 | OsKitaake10g082100 |
| Inversion | Chr7 | 14169182 | 14169441 | OsKitaake07g122300 |
| Inversion | Chr9 | 14836909 | 14837554 | OsKitaake09g101600 |
| Inversion | Chr8 | 14904513 | 14904787 | OsKitaake08g116900 |
| Inversion | Chr7 | 15495201 | 15495475 | |
| Inversion | Chr2 | 15588393 | 15588658 | OsKitaake02g161200 |
| Inversion | Chr3 | 15705385 | 15705866 | OsKitaake03g201500 |
| Inversion | Chr9 | 16338162 | 16338419 | OsKitaake09g118300 |
| Inversion | Chr4 | 16456683 | 16456783 | |
| Inversion | Chr9 | 17493270 | 17493537 | OsKitaake09g131701 |
| Inversion | Chr1 | 17811503 | 17811925 | |
| Inversion | Chr8 | 18021003 | 18021456 | |
| Inversion | Chr8 | 18071024 | 18071420 | OsKitaake08g134400 |
| Inversion | Chr12 | 18807505 | 18807777 | |
| Inversion | Chr5 | 19267618 | 19267983 | |
| Inversion | Chr4 | 19602186 | 19602510 | |
| Inversion | Chr6 | 19991687 | 19991998 | |
| Inversion | Chr2 | 19992672 | 19993171 | |
| Inversion | Chr11 | 20982975 | 20983204 | |
| Inversion | Chr12 | 20986742 | 20986876 | |
| Inversion | Chr3 | 21055074 | 21055463 | OsKitaake03g234300 |
| Inversion | Chr2 | 21842304 | 21842604 | OsKitaake02g212100 |
| Inversion | Chr6 | 21948473 | 21948826 | OsKitaake06g193300 |
| Inversion | Chr9 | 22079228 | 22079676 | OsKitaake09g198000 |
| Inversion | Chr3 | 22175923 | 22176350 | OsKitaake03g241635 |
| Inversion | Chr6 | 22222718 | 22222964 | |
| Inversion | Chr9 | 22298786 | 22298922 | |
| Inversion | Chr10 | 22408824 | 22409215 | OsKitaake10g184100 |
| Inversion | Chr6 | 22562974 | 22563105 | |
| Inversion | Chr2 | 22855378 | 22855642 | OsKitaake02g222400 |
| Inversion | Chr11 | 23454419 | 23454799 | |
| Inversion | Chr8 | 23480874 | 23481202 | OsKitaake08g180800 |
| Inversion | Chr4 | 24133349 | 24133696 | |
| Inversion | Chr6 | 24230391 | 24230815 | |
| Inversion | Chr3 | 24234422 | 24234687 | OsKitaake03g258900 |
| Inversion | Chr8 | 24244232 | 24244651 | OsKitaake08g187600 |
| Inversion | Chr7 | 24971659 | 24971989 | |
| Inversion | Chr8 | 25668457 | 25668692 | OsKitaake08g203200 |
| Inversion | Chr6 | 26081310 | 26081628 | OsKitaake06g233000 |
| Inversion | Chr4 | 26301306 | 26301490 | OsKitaake04g187500 |
| Inversion | Chr2 | 26307955 | 26308258 | OsKitaake02g261800 |
| Inversion | Chr3 | 26412106 | 26412460 | OsKitaake03g275600 |
| Inversion | Chr3 | 26435787 | 26435891 | OsKitaake03g276000 |
| Inversion | Chr5 | 26708540 | 26708898 | OsKitaake05g238500 |
| Inversion | Chr5 | 26900439 | 26900573 | OsKitaake05g240900 |
| Inversion | Chr7 | 27158071 | 27158376 | OsKitaake07g254300 |
| Inversion | Chr2 | 27412526 | 27448991 | |
| Inversion | Chr4 | 27434792 | 27435152 | OsKitaake04g200366 |
| Inversion | Chr6 | 27991202 | 27991465 | OsKitaake06g254200 |
| Inversion | Chr1 | 28175152 | 28175274 | |
| Inversion | Chr6 | 28216819 | 28217005 | OsKitaake06g257400 |
| Inversion | Chr6 | 28400534 | 28400805 | OsKitaake06g259900 |
| Inversion | Chr7 | 28763267 | 28763387 | OsKitaake07g274500 |
| Inversion | Chr1 | 28765515 | 28765731 | OsKitaake01g279300 |
| Inversion | Chr8 | 28777410 | 28777759 | OsKitaake08g247600 |
| Inversion | Chr1 | 29259525 | 29260057 | OsKitaake01g285100 |
| Inversion | Chr11 | 29323792 | 29324012 | |
| Inversion | Chr3 | 29411789 | 29412200 | OsKitaake03g307100 |
| Inversion | Chr11 | 29593818 | 29594092 | OsKitaake11g244000 |
| Inversion | Chr3 | 30087564 | 30087916 | |
| Inversion | Chr3 | 30181665 | 30181867 | OsKitaake03g316500 |
| Inversion | Chr1 | 30297524 | 30297829 | OsKitaake01g298500 |
| Inversion | Chr1 | 33641351 | 33641615 | OsKitaake01g344800 |
| Inversion | Chr1 | 35161957 | 35162342 | 2 |
| Inversion | Chr2 | 35435201 | 35435301 | OsKitaake02g371800 |
| Inversion | Chr4 | 35455707 | 35456173 | |
| Inversion | Chr4 | 36003863 | 36004226 | OsKitaake04g309700 |
| Inversion | Chr2 | 36310684 | 36310977 | OsKitaake02g384200 |
| Inversion | Chr2 | 36514053 | 36514405 | OsKitaake02g388000 |
| Inversion | Chr3 | 36768500 | 36768726 | OsKitaake03g410000 |
| Inversion | Chr1 | 43025029 | 43025145 | OsKitaake01g474600 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 16310024 | Chr3 | 18198417 | |
| Translocation | Chr7 | 21098245 | Chr3 | 18200248 |