Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1610-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1610-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6283272 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 7526432 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 10868302 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14984599 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 35359424 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g372900 |
| SBS | Chr1 | 42228491 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 43524012 | G-A | Homo | INTRON | |
| SBS | Chr2 | 1967328 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g029800 |
| SBS | Chr2 | 2658086 | A-C | Hetero | INTRON | |
| SBS | Chr2 | 6615468 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 32260446 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 6547193 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 17401205 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 29999903 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 29999904 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 36929357 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9120781 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 21795684 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 21795685 | C-T | Hetero | STOP_GAINED | OsKitaake05g177800 |
| SBS | Chr5 | 24614776 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 25016002 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23778787 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 3807493 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 12787063 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 22612321 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1063320 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7738229 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 20572458 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5822595 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 6894307 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13825242 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 17899206 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 22411158 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 1963501 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 18959963 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 28736362 | A-T | Homo | INTRON | |
| SBS | Chr12 | 8527065 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13903628 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g114100 |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 11716620 | 11716785 | 165 | |
| Deletion | Chr4 | 21178230 | 21178231 | 1 | OsKitaake04g116800 |
| Deletion | Chr8 | 25492019 | 25492025 | 6 | |
| Deletion | Chr11 | 28662505 | 28662507 | 2 | |
| Deletion | Chr7 | 29531023 | 29531024 | 1 | OsKitaake07g284600 |
| Deletion | Chr3 | 34710404 | 34710416 | 12 |
Insertions: 6
Inversions: 192
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 65806 | 66182 | OsKitaake12g000700 |
| Inversion | Chr2 | 85994 | 86305 | OsKitaake02g001400 |
| Inversion | Chr6 | 401891 | 402083 | OsKitaake06g002800 |
| Inversion | Chr12 | 1286058 | 1286202 | OsKitaake12g018800 |
| Inversion | Chr12 | 1319529 | 1319977 | OsKitaake12g019300 |
| Inversion | Chr2 | 1328391 | 1328598 | OsKitaake02g020500 |
| Inversion | Chr5 | 1386756 | 1386988 | OsKitaake05g017200 |
| Inversion | Chr2 | 1457594 | 1457918 | OsKitaake02g022700 |
| Inversion | Chr12 | 1459064 | 1459272 | |
| Inversion | Chr3 | 1717993 | 1718183 | OsKitaake03g024500 |
| Inversion | Chr9 | 1886851 | 1887262 | OsKitaake09g010200 |
| Inversion | Chr1 | 2353342 | 2353724 | |
| Inversion | Chr12 | 2369336 | 2369758 | OsKitaake12g036100 |
| Inversion | Chr6 | 2396454 | 2396559 | OsKitaake06g031300 |
| Inversion | Chr5 | 2438006 | 2438239 | OsKitaake05g027700 |
| Inversion | Chr6 | 2862056 | 2862364 | OsKitaake06g038800 |
| Inversion | Chr11 | 2881770 | 2882235 | OsKitaake11g040800 |
| Inversion | Chr3 | 2970738 | 2970863 | OsKitaake03g041900 |
| Inversion | Chr12 | 3114109 | 3114473 | |
| Inversion | Chr5 | 3500046 | 3500338 | OsKitaake05g042200 |
| Inversion | Chr8 | 3955500 | 3955809 | |
| Inversion | Chr12 | 3968515 | 3968883 | OsKitaake12g054400 |
| Inversion | Chr1 | 4210162 | 4210359 | OsKitaake01g056300 |
| Inversion | Chr4 | 4350100 | 4350201 | OsKitaake04g021700 |
| Inversion | Chr8 | 4398993 | 4399428 | OsKitaake08g050000 |
| Inversion | Chr8 | 4417471 | 4417838 | OsKitaake08g050200 |
| Inversion | Chr1 | 4490188 | 4490352 | OsKitaake01g059700 |
| Inversion | Chr5 | 4569518 | 4569662 | OsKitaake05g052800 |
| Inversion | Chr6 | 5379806 | 5380001 | OsKitaake06g072400 |
| Inversion | Chr3 | 5586313 | 5586494 | |
| Inversion | Chr4 | 6001263 | 6001508 | OsKitaake04g030100 |
| Inversion | Chr1 | 6018458 | 6018665 | OsKitaake01g076800 |
| Inversion | Chr2 | 6109844 | 6110132 | OsKitaake02g083100 |
| Inversion | Chr9 | 6499163 | 6499484 | |
| Inversion | Chr2 | 6568930 | 6569067 | |
| Inversion | Chr9 | 6701185 | 6701379 | |
| Inversion | Chr3 | 6828232 | 6828533 | OsKitaake03g096800 |
| Inversion | Chr1 | 7690032 | 7690277 | |
| Inversion | Chr11 | 7983186 | 7983583 | |
| Inversion | Chr10 | 8092361 | 8092716 | OsKitaake10g051200 |
| Inversion | Chr6 | 8151565 | 8151842 | OsKitaake06g103000 |
| Inversion | Chr2 | 8298756 | 8299070 | OsKitaake02g105650 |
| Inversion | Chr6 | 8347410 | 8347594 | OsKitaake06g104600 |
| Inversion | Chr5 | 8449689 | 8449819 | |
| Inversion | Chr1 | 8541487 | 8541883 | OsKitaake01g107000 |
| Inversion | Chr11 | 8808254 | 8808526 | OsKitaake11g094800 |
| Inversion | Chr9 | 8809542 | 8809693 | |
| Inversion | Chr9 | 8977247 | 8977542 | OsKitaake09g052300 |
| Inversion | Chr8 | 9184844 | 9185167 | OsKitaake08g083600 |
| Inversion | Chr11 | 9394416 | 9394585 | OsKitaake11g098300 |
| Inversion | Chr9 | 9455849 | 9455997 | |
| Inversion | Chr11 | 9507819 | 9508039 | OsKitaake11g099500 |
| Inversion | Chr9 | 9627777 | 9628206 | OsKitaake09g058700 |
| Inversion | Chr1 | 9893768 | 9893973 | OsKitaake01g125400 |
| Inversion | Chr12 | 9894374 | 9894540 | |
| Inversion | Chr3 | 9978991 | 9979270 | |
| Inversion | Chr3 | 10449518 | 10449851 | OsKitaake03g143000 |
| Inversion | Chr10 | 10529233 | 10529602 | |
| Inversion | Chr12 | 10537671 | 10537779 | |
| Inversion | Chr9 | 10555719 | 10555941 | |
| Inversion | Chr3 | 10557051 | 10557280 | OsKitaake03g145000 |
| Inversion | Chr12 | 10566020 | 10566272 | OsKitaake12g098650 |
| Inversion | Chr9 | 10783569 | 10783982 | OsKitaake09g066900 |
| Inversion | Chr1 | 11097362 | 11097689 | OsKitaake01g136200 |
| Inversion | Chr8 | 11228755 | 11228907 | OsKitaake08g099800 |
| Inversion | Chr2 | 11283367 | 11283492 | OsKitaake02g131500 |
| Inversion | Chr10 | 11975422 | 11975817 | OsKitaake10g071300 |
| Inversion | Chr4 | 12119408 | 12119732 | |
| Inversion | Chr3 | 12194107 | 12194251 | OsKitaake03g164900 |
| Inversion | Chr8 | 12201474 | 12201686 | OsKitaake08g106000 |
| Inversion | Chr8 | 12281078 | 12281215 | |
| Inversion | Chr10 | 12454277 | 12454500 | |
| Inversion | Chr10 | 12827145 | 12827379 | |
| Inversion | Chr1 | 12858306 | 12858638 | OsKitaake01g153500 |
| Inversion | Chr2 | 12905845 | 12906021 | OsKitaake02g144200 |
| Inversion | Chr3 | 13087593 | 13088156 | OsKitaake03g175500 |
| Inversion | Chr5 | 13465469 | 13465761 | |
| Inversion | Chr5 | 13654081 | 13654464 | OsKitaake05g105800 |
| Inversion | Chr12 | 14033966 | 14034427 | |
| Inversion | Chr10 | 14532271 | 14532738 | |
| Inversion | Chr8 | 14559003 | 14559186 | OsKitaake08g114300 |
| Inversion | Chr11 | 14867781 | 14868034 | OsKitaake11g122700 |
| Inversion | Chr7 | 15260421 | 15260848 | |
| Inversion | Chr9 | 15273493 | 15273788 | OsKitaake09g106800 |
| Inversion | Chr9 | 15591523 | 15591795 | |
| Inversion | Chr9 | 16678947 | 16679152 | |
| Inversion | Chr11 | 16786936 | 16787046 | |
| Inversion | Chr9 | 17580523 | 17580705 | OsKitaake09g132700 |
| Inversion | Chr2 | 17643380 | 17643593 | |
| Inversion | Chr9 | 17744578 | 17744948 | |
| Inversion | Chr1 | 17842404 | 17842542 | |
| Inversion | Chr5 | 17900332 | 17900714 | OsKitaake05g138700 |
| Inversion | Chr2 | 17927011 | 17927445 | |
| Inversion | Chr5 | 17962376 | 17962582 | OsKitaake05g139200 |
| Inversion | Chr5 | 18001521 | 18001702 | OsKitaake05g139900 |
| Inversion | Chr10 | 18254258 | 18254461 | |
| Inversion | Chr3 | 18294479 | 18294792 | OsKitaake03g222800 |
| Inversion | Chr11 | 18397060 | 18397356 | OsKitaake11g142900 |
| Inversion | Chr10 | 18607310 | 18607637 | OsKitaake10g132200 |
| Inversion | Chr12 | 18614741 | 18614942 | OsKitaake12g137000 |
| Inversion | Chr11 | 18757145 | 18757296 | |
| Inversion | Chr11 | 18935982 | 18936234 | OsKitaake11g147600 |
| Inversion | Chr5 | 18979029 | 18979168 | OsKitaake05g148400 |
| Inversion | Chr8 | 19175755 | 19175931 | |
| Inversion | Chr1 | 19444139 | 19444340 | OsKitaake01g194000 |
| Inversion | Chr1 | 19473773 | 19474276 | |
| Inversion | Chr2 | 19510779 | 19510934 | |
| Inversion | Chr7 | 19583616 | 19584076 | |
| Inversion | Chr6 | 19615243 | 19615657 | |
| Inversion | Chr6 | 19764259 | 19764552 | |
| Inversion | Chr9 | 20281630 | 20281989 | |
| Inversion | Chr7 | 20617852 | 20618095 | OsKitaake07g169200 |
| Inversion | Chr2 | 20627979 | 20628410 | |
| Inversion | Chr10 | 20726878 | 20727115 | |
| Inversion | Chr4 | 20790822 | 20791266 | OsKitaake04g112700 |
| Inversion | Chr1 | 21050339 | 21050462 | OsKitaake01g206100 |
| Inversion | Chr10 | 21129356 | 21129568 | |
| Inversion | Chr8 | 21162823 | 21163124 | OsKitaake08g159300 |
| Inversion | Chr6 | 21185748 | 21186074 | OsKitaake06g188000 |
| Inversion | Chr5 | 21428821 | 21429150 | OsKitaake05g174000 |
| Inversion | Chr3 | 21564558 | 21564765 | |
| Inversion | Chr2 | 21570719 | 21571087 | OsKitaake02g208800 |
| Inversion | Chr11 | 21571093 | 21571350 | |
| Inversion | Chr7 | 21724537 | 21724737 | OsKitaake07g182200 |
| Inversion | Chr2 | 21822329 | 21822430 | OsKitaake02g211700 |
| Inversion | Chr7 | 22263512 | 22263775 | |
| Inversion | Chr4 | 22462508 | 22462698 | OsKitaake04g132200 |
| Inversion | Chr9 | 22558001 | 22558347 | OsKitaake09g206500 |
| Inversion | Chr10 | 23269928 | 23270379 | OsKitaake10g196900 |
| Inversion | Chr7 | 23322341 | 23322500 | OsKitaake07g203200 |
| Inversion | Chr1 | 23530427 | 23530650 | OsKitaake01g225800 |
| Inversion | Chr7 | 23546791 | 23547055 | |
| Inversion | Chr12 | 23831490 | 23831849 | |
| Inversion | Chr12 | 23908005 | 23908307 | OsKitaake12g192500 |
| Inversion | Chr12 | 24020568 | 24020937 | |
| Inversion | Chr8 | 24073002 | 24073261 | |
| Inversion | Chr8 | 24106744 | 24107150 | |
| Inversion | Chr5 | 24656799 | 24656949 | |
| Inversion | Chr6 | 24702015 | 24702265 | |
| Inversion | Chr3 | 25047621 | 25047839 | OsKitaake03g265900 |
| Inversion | Chr3 | 25321528 | 25321706 | OsKitaake03g267600 |
| Inversion | Chr3 | 25694619 | 25694982 | |
| Inversion | Chr4 | 25894348 | 25894657 | OsKitaake04g181100 |
| Inversion | Chr2 | 26124724 | 26125072 | OsKitaake02g258500 |
| Inversion | Chr4 | 26156370 | 26156856 | OsKitaake04g184800 |
| Inversion | Chr4 | 26448295 | 26448694 | OsKitaake04g189700 |
| Inversion | Chr7 | 27080598 | 27080881 | OsKitaake07g253200 |
| Inversion | Chr11 | 27201221 | 27201693 | |
| Inversion | Chr5 | 27424187 | 27424364 | |
| Inversion | Chr5 | 27505899 | 27506195 | OsKitaake05g250300 |
| Inversion | Chr6 | 27917442 | 27917769 | OsKitaake06g253400 |
| Inversion | Chr1 | 28046143 | 28046311 | OsKitaake01g272800 |
| Inversion | Chr6 | 28213729 | 28214025 | OsKitaake06g257400 |
| Inversion | Chr4 | 28244961 | 28245094 | OsKitaake04g210200 |
| Inversion | Chr5 | 28375708 | 28376014 | OsKitaake05g263900 |
| Inversion | Chr5 | 28398724 | 28399031 | |
| Inversion | Chr7 | 28479328 | 28479679 | OsKitaake07g271100 |
| Inversion | Chr8 | 28592462 | 28592925 | OsKitaake08g245100 |
| Inversion | Chr7 | 28946639 | 28946960 | OsKitaake07g276500 |
| Inversion | Chr4 | 29019948 | 29020243 | OsKitaake04g219000 |
| Inversion | Chr2 | 29044125 | 29044302 | OsKitaake02g292100 |
| Inversion | Chr8 | 29269702 | 29269851 | OsKitaake08g255100 |
| Inversion | Chr1 | 29539240 | 29539783 | OsKitaake01g289400 |
| Inversion | Chr3 | 30275477 | 30275685 | OsKitaake03g317600 |
| Inversion | Chr6 | 30582426 | 30582915 | |
| Inversion | Chr4 | 30685905 | 30686193 | |
| Inversion | Chr1 | 31020539 | 31020745 | OsKitaake01g309000 |
| Inversion | Chr4 | 31456278 | 31456434 | OsKitaake04g247000 |
| Inversion | Chr3 | 31762161 | 31762371 | OsKitaake03g334700 |
| Inversion | Chr3 | 32186447 | 32186675 | OsKitaake03g341200 |
| Inversion | Chr4 | 32466535 | 32466761 | OsKitaake04g260000 |
| Inversion | Chr3 | 32485743 | 32485891 | OsKitaake03g344200 |
| Inversion | Chr1 | 32640728 | 32640962 | OsKitaake01g331100 |
| Inversion | Chr4 | 32852430 | 33149084 | OsKitaake04g269800 |
| Inversion | Chr4 | 32852434 | 33149082 | OsKitaake04g269800 |
| Inversion | Chr4 | 33596473 | 33596875 | OsKitaake04g278000 |
| Inversion | Chr2 | 34828820 | 34829104 | OsKitaake02g363000 |
| Inversion | Chr1 | 34950188 | 34950326 | OsKitaake01g368200 |
| Inversion | Chr1 | 35004782 | 35005016 | OsKitaake01g369200 |
| Inversion | Chr1 | 35008835 | 35009255 | OsKitaake01g369300 |
| Inversion | Chr3 | 35567929 | 35568421 | OsKitaake03g390100 |
| Inversion | Chr3 | 35727435 | 35727698 | OsKitaake03g392600 |
| Inversion | Chr2 | 35825915 | 35826022 | |
| Inversion | Chr4 | 35896937 | 35897068 | |
| Inversion | Chr2 | 36232471 | 36232737 | OsKitaake02g383200 |
| Inversion | Chr3 | 36656108 | 36656487 | OsKitaake03g408000 |
| Inversion | Chr4 | 36752667 | 36752872 | OsKitaake04g320300 |
| Inversion | Chr3 | 36804496 | 36804695 | OsKitaake03g410700 |
| Inversion | Chr3 | 37226345 | 37226521 | OsKitaake03g417000 |
| Inversion | Chr3 | 37372882 | 37372984 | OsKitaake03g420000 |
| Inversion | Chr1 | 39082298 | 39082435 | |
| Inversion | Chr1 | 39148818 | 39149176 | OsKitaake01g420500 |