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Mutant Information 

Mutant NameFN1613-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN1613-S Alignment File
Seed Availability Yes [Order Seeds]
Phenotype
  • TO:0000326 (Leaf Color) = Normal
  • TO:0000137 (Days to heading) = Normal (Between 75% and 125%)
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file


Variant Information 

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected
SBS  Chr116441236G-AHeteroINTERGENIC
SBS  Chr131122999G-AHeteroINTERGENIC
SBS  Chr25636927C-THeteroINTERGENIC
SBS  Chr218130586A-THomoINTERGENIC
SBS  Chr317426855G-AHeteroINTERGENIC
SBS  Chr326126632C-THeteroINTERGENIC
SBS  Chr45160210A-GHeteroINTERGENIC
SBS  Chr410737650T-CHeteroINTERGENIC
SBS  Chr422760162C-THeteroINTERGENIC
SBS  Chr51683331C-THomoINTERGENIC
SBS  Chr522698733T-GHomoUTR_3_PRIME
SBS  Chr79548478T-CHeteroINTRON
SBS  Chr710206151C-THeteroINTERGENIC
SBS  Chr726398447A-THeteroINTERGENIC
SBS  Chr85051835A-GHeteroINTERGENIC
SBS  Chr89915793T-AHeteroINTERGENIC
SBS  Chr921708939G-AHomoSYNONYMOUS_CODING
SBS  Chr1014349070T-CHeteroSYNONYMOUS_CODING
SBS  Chr1017664501C-GHeteroINTERGENIC
SBS  Chr1224917270G-CHomoINTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes
Deletion  Chr24273414273476
Deletion  Chr5113185311318563
Deletion  Chr2174697717469836
Deletion  Chr1117557096175570982
Deletion  Chr718248529182485312
Deletion  Chr619623103196231074
Deletion  Chr620879052208790597
Deletion  Chr225057569250575712
Deletion  Chr8262557692625578011
Deletion  Chr328955953289559541
Deletion  Chr5291095422910955311
Deletion  Chr230889667308896692
Deletion  Chr436122585361225905

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes
Insertion  Chr3498106949810722
Insertion  Chr823032008230320112

Inversions: 26

Variant Type

Chromosome

Position 1

Position 2

Number of Genes
Inversion  Chr125413954372OsKitaake12g000600
Inversion  Chr723238102324308
Inversion  Chr133030563303491OsKitaake01g043200
Inversion  Chr6336484233651142
Inversion  Chr351298295130034OsKitaake03g073700
Inversion  Chr668700506870415OsKitaake06g089000
Inversion  Chr1098809409881323OsKitaake10g057700
Inversion  Chr91050216510502481OsKitaake09g065600
Inversion  Chr31105017411050591OsKitaake03g151400
Inversion  Chr21265538512655701
Inversion  Chr91288273412882973OsKitaake09g085700
Inversion  Chr101483310314833379
Inversion  Chr51505071215051112
Inversion  Chr21672134716721467
Inversion  Chr81706581217065965OsKitaake08g130100
Inversion  Chr111714520117145459OsKitaake11g133800
Inversion  Chr71855089718551023
Inversion  Chr121902073419021045OsKitaake12g140400
Inversion  Chr11972371319724277OsKitaake01g196200
Inversion  Chr52214735822147668
Inversion  Chr102237668122376984OsKitaake10g183600
Inversion  Chr82260755122607773OsKitaake08g173400
Inversion  Chr122280969022810115
Inversion  Chr112797472528390736
Inversion  Chr112797495128390744
Inversion  Chr33504697535047233OsKitaake03g383100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes
Translocation  Chr516334060Chr348211922
Translocation  Chr516334066Chr348115062