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Mutant Information

Mutant Name	FN1614-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1614-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13444100 A-G Hetero INTERGENIC
SBS Chr1 42970962 G-T Hetero UTR_3_PRIME
SBS Chr2 5015954 C-A Hetero INTERGENIC
SBS Chr3 10206321 T-C Hetero INTERGENIC
SBS Chr4 8421454 A-G Homo INTERGENIC
SBS Chr4 12983768 G-T Homo INTERGENIC
SBS Chr4 25833317 A-T Homo INTRON
SBS Chr5 6871853 A-G Hetero INTRON
SBS Chr5 8638256 T-C Hetero INTRON
SBS Chr5 15163559 A-T Hetero INTERGENIC
SBS Chr5 26406657 G-A Hetero INTERGENIC
SBS Chr6 13313464 A-G Hetero INTERGENIC
SBS Chr6 14509587 G-A Hetero INTERGENIC
SBS Chr6 18755986 G-A Hetero INTERGENIC
SBS Chr7 1464400 T-A Homo INTERGENIC
SBS Chr7 11180891 C-A Hetero INTERGENIC
SBS Chr7 11487037 G-C Hetero INTERGENIC
SBS Chr7 27447299 A-T Homo NON_SYNONYMOUS_CODING OsKitaake07g255200
SBS Chr8 4498522 C-T Homo INTRON
SBS Chr8 12071950 C-T Homo INTERGENIC
SBS Chr8 12071951 T-C Homo INTERGENIC
SBS Chr8 13852541 T-G Homo INTERGENIC
SBS Chr9 19973886 C-T Homo INTERGENIC
SBS Chr9 22565710 T-C Homo INTRON
SBS Chr10 17857596 A-G Homo NON_SYNONYMOUS_CODING OsKitaake10g123900
SBS Chr11 6113936 T-C Homo INTERGENIC
SBS Chr11 14455400 G-T Homo INTERGENIC
SBS Chr11 15062838 A-T Homo INTERGENIC
SBS Chr11 25591960 T-C Hetero INTERGENIC
SBS Chr12 1039605 G-A Hetero INTERGENIC
SBS Chr12 11309028 G-A Homo INTERGENIC
SBS Chr12 22310747 G-T Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 18326 18327 1
Deletion Chr12 717966 717968 2
Deletion Chr1 7898697 7898703 6
Deletion Chr7 8355001 8368000 12999
Deletion Chr12 9726001 9753000 26999 OsKitaake12g093700
Deletion Chr1 10254001 10269000 14999
Deletion Chr11 12456290 12456291 1
Deletion Chr6 13449479 13449486 7 OsKitaake06g141700
Deletion Chr7 14030617 14030818 201 OsKitaake07g121100
Deletion Chr10 16213479 16213489 10
Deletion Chr11 16701508 16701509 1
Deletion Chr1 17988658 17988843 185 OsKitaake01g182400
Deletion Chr11 19124795 19124801 6
Deletion Chr1 27071001 27084000 12999
Deletion Chr3 28616001 28631000 14999
Deletion Chr1 31825001 31834000 8999
Deletion Chr2 32533360 32533362 2
Deletion Chr4 34627001 34640000 12999

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 30668066 30668071 4
Insertion Chr4 31970543 31970546 2
Insertion Chr7 14494661 14494664 2
Insertion Chr9 17962126 17962128 1 OsKitaake09g137201
Insertion Chr12 10016519 10016522 2
Insertion Chr1 21788507 21788510 2
Insertion Chr3 29264111 29264113 1
Insertion Chr5 12532511 12532513 1
Insertion Chr5 16011110 16011112 1
Insertion Chr8 8067714 8067716 1

Inversions: 13

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 415444 415872 OsKitaake07g003800
Inversion Chr3 1986466 1986875 OsKitaake03g028600
Inversion Chr3 4669971 4670158 OsKitaake03g067600
Inversion Chr1 5610620 5610872
Inversion Chr10 15895664 15895917 OsKitaake10g103800
Inversion Chr8 16992790 16992954 2
Inversion Chr1 17979635 17979932 OsKitaake01g182400
Inversion Chr5 20718671 20718832 OsKitaake05g165600
Inversion Chr5 21063140 21063353 OsKitaake05g169400
Inversion Chr2 21484105 21484305 OsKitaake02g207700
Inversion Chr5 24069893 24070215
Inversion Chr7 25994149 25994369
Inversion Chr3 27326335 27326519

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13444100	A-G	Hetero	INTERGENIC
SBS	Chr1	42970962	G-T	Hetero	UTR_3_PRIME
SBS	Chr2	5015954	C-A	Hetero	INTERGENIC
SBS	Chr3	10206321	T-C	Hetero	INTERGENIC
SBS	Chr4	8421454	A-G	Homo	INTERGENIC
SBS	Chr4	12983768	G-T	Homo	INTERGENIC
SBS	Chr4	25833317	A-T	Homo	INTRON
SBS	Chr5	6871853	A-G	Hetero	INTRON
SBS	Chr5	8638256	T-C	Hetero	INTRON
SBS	Chr5	15163559	A-T	Hetero	INTERGENIC
SBS	Chr5	26406657	G-A	Hetero	INTERGENIC
SBS	Chr6	13313464	A-G	Hetero	INTERGENIC
SBS	Chr6	14509587	G-A	Hetero	INTERGENIC
SBS	Chr6	18755986	G-A	Hetero	INTERGENIC
SBS	Chr7	1464400	T-A	Homo	INTERGENIC
SBS	Chr7	11180891	C-A	Hetero	INTERGENIC
SBS	Chr7	11487037	G-C	Hetero	INTERGENIC
SBS	Chr7	27447299	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g255200
SBS	Chr8	4498522	C-T	Homo	INTRON
SBS	Chr8	12071950	C-T	Homo	INTERGENIC
SBS	Chr8	12071951	T-C	Homo	INTERGENIC
SBS	Chr8	13852541	T-G	Homo	INTERGENIC
SBS	Chr9	19973886	C-T	Homo	INTERGENIC
SBS	Chr9	22565710	T-C	Homo	INTRON
SBS	Chr10	17857596	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g123900
SBS	Chr11	6113936	T-C	Homo	INTERGENIC
SBS	Chr11	14455400	G-T	Homo	INTERGENIC
SBS	Chr11	15062838	A-T	Homo	INTERGENIC
SBS	Chr11	25591960	T-C	Hetero	INTERGENIC
SBS	Chr12	1039605	G-A	Hetero	INTERGENIC
SBS	Chr12	11309028	G-A	Homo	INTERGENIC
SBS	Chr12	22310747	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	18326	18327	1
Deletion	Chr12	717966	717968	2
Deletion	Chr1	7898697	7898703	6
Deletion	Chr7	8355001	8368000	12999
Deletion	Chr12	9726001	9753000	26999	OsKitaake12g093700
Deletion	Chr1	10254001	10269000	14999
Deletion	Chr11	12456290	12456291	1
Deletion	Chr6	13449479	13449486	7	OsKitaake06g141700
Deletion	Chr7	14030617	14030818	201	OsKitaake07g121100
Deletion	Chr10	16213479	16213489	10
Deletion	Chr11	16701508	16701509	1
Deletion	Chr1	17988658	17988843	185	OsKitaake01g182400
Deletion	Chr11	19124795	19124801	6
Deletion	Chr1	27071001	27084000	12999
Deletion	Chr3	28616001	28631000	14999
Deletion	Chr1	31825001	31834000	8999
Deletion	Chr2	32533360	32533362	2
Deletion	Chr4	34627001	34640000	12999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	415444	415872	OsKitaake07g003800
Inversion	Chr3	1986466	1986875	OsKitaake03g028600
Inversion	Chr3	4669971	4670158	OsKitaake03g067600
Inversion	Chr1	5610620	5610872
Inversion	Chr10	15895664	15895917	OsKitaake10g103800
Inversion	Chr8	16992790	16992954	2
Inversion	Chr1	17979635	17979932	OsKitaake01g182400
Inversion	Chr5	20718671	20718832	OsKitaake05g165600
Inversion	Chr5	21063140	21063353	OsKitaake05g169400
Inversion	Chr2	21484105	21484305	OsKitaake02g207700
Inversion	Chr5	24069893	24070215
Inversion	Chr7	25994149	25994369
Inversion	Chr3	27326335	27326519

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes