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Mutant Information

Mutant Name	FN1615-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1615-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 365859 T-G Hetero INTRON
SBS Chr1 11388018 G-T Hetero UTR_3_PRIME
SBS Chr1 17113159 T-C Hetero INTERGENIC
SBS Chr1 23026634 G-C Hetero INTERGENIC
SBS Chr1 31919108 C-T Hetero INTRON
SBS Chr2 30289601 C-T Hetero INTERGENIC
SBS Chr2 31411478 T-C Hetero INTERGENIC
SBS Chr3 3419920 A-C Hetero INTRON
SBS Chr3 3419922 C-A Hetero INTRON
SBS Chr3 10739733 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g147600
SBS Chr3 11755135 A-C Hetero INTERGENIC
SBS Chr3 14307768 T-G Homo INTERGENIC
SBS Chr3 15859245 T-C Hetero INTERGENIC
SBS Chr3 16415326 A-G Homo INTERGENIC
SBS Chr3 22107918 A-G Hetero SYNONYMOUS_CODING
SBS Chr4 532236 G-C Hetero INTERGENIC
SBS Chr4 10818621 A-G Homo INTERGENIC
SBS Chr4 32266553 T-C Hetero INTERGENIC
SBS Chr5 12273934 G-T Homo INTERGENIC
SBS Chr5 12273935 G-T Homo INTERGENIC
SBS Chr5 21999292 G-A Hetero INTERGENIC
SBS Chr6 19016055 G-A Homo INTERGENIC
SBS Chr7 1136746 A-G Homo INTERGENIC
SBS Chr7 11178909 G-A Hetero INTERGENIC
SBS Chr8 5622334 C-G Homo INTERGENIC
SBS Chr8 9562522 T-C Hetero INTERGENIC
SBS Chr8 18257405 T-C Hetero INTERGENIC
SBS Chr8 19536561 G-A Homo INTERGENIC
SBS Chr8 22850908 G-A Hetero INTERGENIC
SBS Chr9 3293089 G-A Hetero INTERGENIC
SBS Chr9 6815448 T-A Hetero INTERGENIC
SBS Chr9 15179463 A-G Hetero INTERGENIC
SBS Chr9 16286517 A-T Hetero INTERGENIC
SBS Chr9 16693104 C-A Hetero INTERGENIC
SBS Chr10 4798316 T-C Hetero UTR_3_PRIME
SBS Chr10 16745144 C-T Hetero INTERGENIC
SBS Chr11 1704498 T-C Hetero INTERGENIC
SBS Chr11 5071886 G-T Homo INTERGENIC
SBS Chr11 8738384 G-T Homo INTERGENIC
SBS Chr11 12403945 C-A Hetero SPLICE_SITE_ACCEPTOR OsKitaake11g113500
SBS Chr12 7830836 G-A Hetero INTERGENIC
SBS Chr12 25026197 A-T Homo INTERGENIC
SBS Chr12 25457695 T-A Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 219110 219113 3
Deletion Chr5 8278344 8278351 7
Deletion Chr5 10928001 10937000 8999
Deletion Chr8 11204899 11204900 1 OsKitaake08g099700
Deletion Chr5 11914113 11914116 3
Deletion Chr3 14445450 14445452 2
Deletion Chr10 14644999 14645047 48
Deletion Chr1 17626716 17626722 6
Deletion Chr7 19716990 19716995 5
Deletion Chr7 19960293 19960310 17
Deletion Chr3 20912768 20912770 2
Deletion Chr1 33223971 33223972 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6483230 6483233 2
Insertion Chr3 22175582 22175605 22 OsKitaake03g241635

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 11834925 Chr1 19342534
Translocation Chr4 14394290 Chr1 26784385

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	365859	T-G	Hetero	INTRON
SBS	Chr1	11388018	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	17113159	T-C	Hetero	INTERGENIC
SBS	Chr1	23026634	G-C	Hetero	INTERGENIC
SBS	Chr1	31919108	C-T	Hetero	INTRON
SBS	Chr2	30289601	C-T	Hetero	INTERGENIC
SBS	Chr2	31411478	T-C	Hetero	INTERGENIC
SBS	Chr3	3419920	A-C	Hetero	INTRON
SBS	Chr3	3419922	C-A	Hetero	INTRON
SBS	Chr3	10739733	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g147600
SBS	Chr3	11755135	A-C	Hetero	INTERGENIC
SBS	Chr3	14307768	T-G	Homo	INTERGENIC
SBS	Chr3	15859245	T-C	Hetero	INTERGENIC
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr3	22107918	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr4	532236	G-C	Hetero	INTERGENIC
SBS	Chr4	10818621	A-G	Homo	INTERGENIC
SBS	Chr4	32266553	T-C	Hetero	INTERGENIC
SBS	Chr5	12273934	G-T	Homo	INTERGENIC
SBS	Chr5	12273935	G-T	Homo	INTERGENIC
SBS	Chr5	21999292	G-A	Hetero	INTERGENIC
SBS	Chr6	19016055	G-A	Homo	INTERGENIC
SBS	Chr7	1136746	A-G	Homo	INTERGENIC
SBS	Chr7	11178909	G-A	Hetero	INTERGENIC
SBS	Chr8	5622334	C-G	Homo	INTERGENIC
SBS	Chr8	9562522	T-C	Hetero	INTERGENIC
SBS	Chr8	18257405	T-C	Hetero	INTERGENIC
SBS	Chr8	19536561	G-A	Homo	INTERGENIC
SBS	Chr8	22850908	G-A	Hetero	INTERGENIC
SBS	Chr9	3293089	G-A	Hetero	INTERGENIC
SBS	Chr9	6815448	T-A	Hetero	INTERGENIC
SBS	Chr9	15179463	A-G	Hetero	INTERGENIC
SBS	Chr9	16286517	A-T	Hetero	INTERGENIC
SBS	Chr9	16693104	C-A	Hetero	INTERGENIC
SBS	Chr10	4798316	T-C	Hetero	UTR_3_PRIME
SBS	Chr10	16745144	C-T	Hetero	INTERGENIC
SBS	Chr11	1704498	T-C	Hetero	INTERGENIC
SBS	Chr11	5071886	G-T	Homo	INTERGENIC
SBS	Chr11	8738384	G-T	Homo	INTERGENIC
SBS	Chr11	12403945	C-A	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake11g113500
SBS	Chr12	7830836	G-A	Hetero	INTERGENIC
SBS	Chr12	25026197	A-T	Homo	INTERGENIC
SBS	Chr12	25457695	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	219110	219113	3
Deletion	Chr5	8278344	8278351	7
Deletion	Chr5	10928001	10937000	8999
Deletion	Chr8	11204899	11204900	1	OsKitaake08g099700
Deletion	Chr5	11914113	11914116	3
Deletion	Chr3	14445450	14445452	2
Deletion	Chr10	14644999	14645047	48
Deletion	Chr1	17626716	17626722	6
Deletion	Chr7	19716990	19716995	5
Deletion	Chr7	19960293	19960310	17
Deletion	Chr3	20912768	20912770	2
Deletion	Chr1	33223971	33223972	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	11834925	Chr1	19342534
Translocation	Chr4	14394290	Chr1	26784385

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes