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Mutant Information

Mutant Name	FN1617-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1617-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26966087 A-T Hetero INTERGENIC
SBS Chr1 35463687 C-T Homo INTERGENIC
SBS Chr1 42902399 G-A Hetero INTERGENIC
SBS Chr2 21509515 T-C Homo INTERGENIC
SBS Chr2 27934436 G-A Hetero INTERGENIC
SBS Chr3 2304925 A-G Hetero INTERGENIC
SBS Chr3 14539111 C-A Hetero INTERGENIC
SBS Chr3 16311735 C-T Homo INTERGENIC
SBS Chr3 18511858 A-G Hetero INTERGENIC
SBS Chr3 24921910 G-T Homo INTERGENIC
SBS Chr3 34986834 C-G Hetero INTRON
SBS Chr4 2368873 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g014700
SBS Chr4 9729822 G-A Hetero INTERGENIC
SBS Chr4 11576214 G-A Hetero INTERGENIC
SBS Chr4 24967012 A-C Hetero INTRON
SBS Chr5 2969150 G-A Hetero INTERGENIC
SBS Chr5 3761567 C-T Hetero INTERGENIC
SBS Chr5 27897109 G-T Hetero INTERGENIC
SBS Chr5 28403760 C-A Homo INTERGENIC
SBS Chr6 13906224 A-G Hetero INTERGENIC
SBS Chr7 6673369 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g076500
SBS Chr7 10495597 C-T Hetero INTERGENIC
SBS Chr7 19272098 G-A Hetero INTERGENIC
SBS Chr7 24383382 C-G Hetero INTRON
SBS Chr8 5749609 C-T Hetero INTERGENIC
SBS Chr8 14234639 C-A Hetero INTERGENIC
SBS Chr9 1981914 C-T Hetero INTERGENIC
SBS Chr9 3364999 T-A Hetero INTERGENIC
SBS Chr9 10808552 T-C Hetero INTERGENIC
SBS Chr9 20645985 A-G Hetero INTERGENIC
SBS Chr10 10460906 T-C Hetero INTERGENIC
SBS Chr11 6135216 T-C Hetero INTERGENIC
SBS Chr11 11810702 C-T Hetero INTERGENIC
SBS Chr11 14547641 C-G Homo INTRON
SBS Chr11 23579353 T-A Homo INTERGENIC
SBS Chr11 23579354 T-A Homo INTERGENIC
SBS Chr12 4331488 G-A Hetero INTERGENIC
SBS Chr12 16453588 G-A Hetero INTERGENIC
SBS Chr12 20739886 A-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 7201733 7201734 1
Deletion Chr10 13756956 13756960 4
Deletion Chr3 14429001 14520000 90999 9
Deletion Chr1 15550721 15550722 1
Deletion Chr1 16127420 16127425 5
Deletion Chr11 16854944 16854953 9
Deletion Chr4 17993002 17993004 2
Deletion Chr3 19426278 19426290 12
Deletion Chr9 22709935 22709936 1
Deletion Chr2 27978518 27978519 1 OsKitaake02g282300
Deletion Chr7 29478630 29478631 1
Deletion Chr1 38290359 38290375 16

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5314621 5314623 1
Insertion Chr2 1887612 1887614 1 OsKitaake02g028900
Insertion Chr3 3013941 3013944 2
Insertion Chr4 33656688 33656691 2
Insertion Chr6 5340379 5340382 2
Insertion Chr7 4036415 4036418 2
Insertion Chr4 8272972 8272974 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 24966826 Chr3 6592999 2
Translocation Chr4 24966833 Chr3 6584670 OsKitaake04g166900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26966087	A-T	Hetero	INTERGENIC
SBS	Chr1	35463687	C-T	Homo	INTERGENIC
SBS	Chr1	42902399	G-A	Hetero	INTERGENIC
SBS	Chr2	21509515	T-C	Homo	INTERGENIC
SBS	Chr2	27934436	G-A	Hetero	INTERGENIC
SBS	Chr3	2304925	A-G	Hetero	INTERGENIC
SBS	Chr3	14539111	C-A	Hetero	INTERGENIC
SBS	Chr3	16311735	C-T	Homo	INTERGENIC
SBS	Chr3	18511858	A-G	Hetero	INTERGENIC
SBS	Chr3	24921910	G-T	Homo	INTERGENIC
SBS	Chr3	34986834	C-G	Hetero	INTRON
SBS	Chr4	2368873	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g014700
SBS	Chr4	9729822	G-A	Hetero	INTERGENIC
SBS	Chr4	11576214	G-A	Hetero	INTERGENIC
SBS	Chr4	24967012	A-C	Hetero	INTRON
SBS	Chr5	2969150	G-A	Hetero	INTERGENIC
SBS	Chr5	3761567	C-T	Hetero	INTERGENIC
SBS	Chr5	27897109	G-T	Hetero	INTERGENIC
SBS	Chr5	28403760	C-A	Homo	INTERGENIC
SBS	Chr6	13906224	A-G	Hetero	INTERGENIC
SBS	Chr7	6673369	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g076500
SBS	Chr7	10495597	C-T	Hetero	INTERGENIC
SBS	Chr7	19272098	G-A	Hetero	INTERGENIC
SBS	Chr7	24383382	C-G	Hetero	INTRON
SBS	Chr8	5749609	C-T	Hetero	INTERGENIC
SBS	Chr8	14234639	C-A	Hetero	INTERGENIC
SBS	Chr9	1981914	C-T	Hetero	INTERGENIC
SBS	Chr9	3364999	T-A	Hetero	INTERGENIC
SBS	Chr9	10808552	T-C	Hetero	INTERGENIC
SBS	Chr9	20645985	A-G	Hetero	INTERGENIC
SBS	Chr10	10460906	T-C	Hetero	INTERGENIC
SBS	Chr11	6135216	T-C	Hetero	INTERGENIC
SBS	Chr11	11810702	C-T	Hetero	INTERGENIC
SBS	Chr11	14547641	C-G	Homo	INTRON
SBS	Chr11	23579353	T-A	Homo	INTERGENIC
SBS	Chr11	23579354	T-A	Homo	INTERGENIC
SBS	Chr12	4331488	G-A	Hetero	INTERGENIC
SBS	Chr12	16453588	G-A	Hetero	INTERGENIC
SBS	Chr12	20739886	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	7201733	7201734	1
Deletion	Chr10	13756956	13756960	4
Deletion	Chr3	14429001	14520000	90999	9
Deletion	Chr1	15550721	15550722	1
Deletion	Chr1	16127420	16127425	5
Deletion	Chr11	16854944	16854953	9
Deletion	Chr4	17993002	17993004	2
Deletion	Chr3	19426278	19426290	12
Deletion	Chr9	22709935	22709936	1
Deletion	Chr2	27978518	27978519	1	OsKitaake02g282300
Deletion	Chr7	29478630	29478631	1
Deletion	Chr1	38290359	38290375	16

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	24966826	Chr3	6592999	2
Translocation	Chr4	24966833	Chr3	6584670	OsKitaake04g166900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes