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Mutant Information

Mutant Name	FN1618-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1618-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26536966 C-A Hetero INTERGENIC
SBS Chr1 35906260 C-G Hetero INTERGENIC
SBS Chr1 40380536 G-A Hetero INTERGENIC
SBS Chr2 1639289 C-G Homo INTERGENIC
SBS Chr2 22754821 G-C Hetero INTERGENIC
SBS Chr2 25882780 A-C Hetero INTRON
SBS Chr3 14637200 C-T Homo INTERGENIC
SBS Chr4 20779 G-C Hetero INTERGENIC
SBS Chr4 4313372 G-C Hetero INTERGENIC
SBS Chr4 5341905 C-T Homo INTERGENIC
SBS Chr4 6157063 G-C Hetero INTERGENIC
SBS Chr4 8463488 G-A Homo INTERGENIC
SBS Chr5 792961 G-A Hetero INTRON
SBS Chr5 28142424 G-C Hetero INTERGENIC
SBS Chr6 9924445 C-T Hetero INTERGENIC
SBS Chr6 10544460 G-T Hetero INTERGENIC
SBS Chr6 15421492 A-G Hetero INTERGENIC
SBS Chr6 18109547 T-C Hetero START_GAINED
SBS Chr8 1523321 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g019000
SBS Chr8 4170448 G-A Hetero INTERGENIC
SBS Chr8 26908407 G-C Hetero INTERGENIC
SBS Chr9 5790596 C-A Hetero INTERGENIC
SBS Chr11 24807073 T-A Hetero INTERGENIC
SBS Chr12 2888466 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 6740760 6740766 6 OsKitaake03g095700
Deletion Chr4 8847820 8847825 5
Deletion Chr11 13875012 13875013 1
Deletion Chr8 15843248 15843250 2
Deletion Chr3 17118408 17118425 17
Deletion Chr5 17616136 17616145 9
Deletion Chr8 20270386 20270388 2
Deletion Chr5 20410365 20410366 1
Deletion Chr9 22458703 22458717 14
Deletion Chr7 27080378 27080380 2 OsKitaake07g253200
Deletion Chr4 28832427 28832431 4
Deletion Chr3 29631648 29631661 13
Deletion Chr3 34098822 34098823 1
Deletion Chr3 36305418 36305422 4

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 14606742 14606745 2
Insertion Chr4 19613047 19613052 4
Insertion Chr7 26069047 26069050 2
Insertion Chr9 1677493 1677497 3
Insertion Chr11 6420656 6420659 2
Insertion Chr2 20550501 20550503 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26536966	C-A	Hetero	INTERGENIC
SBS	Chr1	35906260	C-G	Hetero	INTERGENIC
SBS	Chr1	40380536	G-A	Hetero	INTERGENIC
SBS	Chr2	1639289	C-G	Homo	INTERGENIC
SBS	Chr2	22754821	G-C	Hetero	INTERGENIC
SBS	Chr2	25882780	A-C	Hetero	INTRON
SBS	Chr3	14637200	C-T	Homo	INTERGENIC
SBS	Chr4	20779	G-C	Hetero	INTERGENIC
SBS	Chr4	4313372	G-C	Hetero	INTERGENIC
SBS	Chr4	5341905	C-T	Homo	INTERGENIC
SBS	Chr4	6157063	G-C	Hetero	INTERGENIC
SBS	Chr4	8463488	G-A	Homo	INTERGENIC
SBS	Chr5	792961	G-A	Hetero	INTRON
SBS	Chr5	28142424	G-C	Hetero	INTERGENIC
SBS	Chr6	9924445	C-T	Hetero	INTERGENIC
SBS	Chr6	10544460	G-T	Hetero	INTERGENIC
SBS	Chr6	15421492	A-G	Hetero	INTERGENIC
SBS	Chr6	18109547	T-C	Hetero	START_GAINED
SBS	Chr8	1523321	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g019000
SBS	Chr8	4170448	G-A	Hetero	INTERGENIC
SBS	Chr8	26908407	G-C	Hetero	INTERGENIC
SBS	Chr9	5790596	C-A	Hetero	INTERGENIC
SBS	Chr11	24807073	T-A	Hetero	INTERGENIC
SBS	Chr12	2888466	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	6740760	6740766	6	OsKitaake03g095700
Deletion	Chr4	8847820	8847825	5
Deletion	Chr11	13875012	13875013	1
Deletion	Chr8	15843248	15843250	2
Deletion	Chr3	17118408	17118425	17
Deletion	Chr5	17616136	17616145	9
Deletion	Chr8	20270386	20270388	2
Deletion	Chr5	20410365	20410366	1
Deletion	Chr9	22458703	22458717	14
Deletion	Chr7	27080378	27080380	2	OsKitaake07g253200
Deletion	Chr4	28832427	28832431	4
Deletion	Chr3	29631648	29631661	13
Deletion	Chr3	34098822	34098823	1
Deletion	Chr3	36305418	36305422	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes