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Mutant Information

Mutant Name	FN1619-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1619-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8885311 T-C Homo INTERGENIC
SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr1 33265402 G-T Hetero UTR_3_PRIME
SBS Chr1 36990382 T-C Hetero INTERGENIC
SBS Chr2 921623 C-G Hetero SPLICE_SITE_REGION
SBS Chr2 10540126 G-T Homo INTERGENIC
SBS Chr2 24452022 C-T Homo INTERGENIC
SBS Chr2 34963868 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g365000
SBS Chr3 6094662 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g087400
SBS Chr3 9712047 T-C Hetero INTERGENIC
SBS Chr3 11202711 C-T Hetero INTRON
SBS Chr3 32072158 G-A Hetero INTERGENIC
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr4 831267 G-T Homo INTERGENIC
SBS Chr5 4317742 G-T Hetero INTERGENIC
SBS Chr5 27501722 T-A Hetero UTR_3_PRIME
SBS Chr5 29066241 T-A Hetero INTRON
SBS Chr5 29707514 G-A Hetero INTERGENIC
SBS Chr6 8654753 T-C Hetero INTERGENIC
SBS Chr6 11683681 C-A Hetero INTERGENIC
SBS Chr6 13335423 A-T Hetero INTERGENIC
SBS Chr6 19844234 A-C Hetero INTERGENIC
SBS Chr6 25781570 C-T Hetero INTERGENIC
SBS Chr7 9372739 C-A Hetero INTERGENIC
SBS Chr7 10529822 C-T Hetero INTERGENIC
SBS Chr7 16045365 T-A Hetero INTERGENIC
SBS Chr7 17105969 C-T Hetero INTERGENIC
SBS Chr7 25234264 C-T Hetero INTERGENIC
SBS Chr7 29236492 A-G Hetero INTERGENIC
SBS Chr8 3835949 G-A Homo INTERGENIC
SBS Chr8 11126599 T-C Hetero INTERGENIC
SBS Chr8 18069731 T-A Hetero UTR_3_PRIME
SBS Chr8 23741741 T-A Hetero UTR_3_PRIME
SBS Chr8 24997061 G-A Hetero INTERGENIC
SBS Chr9 8489738 G-T Homo NON_SYNONYMOUS_CODING OsKitaake09g050100
SBS Chr9 8761780 G-A Hetero INTERGENIC
SBS Chr9 13287374 C-T Hetero INTERGENIC
SBS Chr10 5552560 C-T Hetero INTERGENIC
SBS Chr10 7588468 T-G Hetero INTERGENIC
SBS Chr10 18579478 C-T Hetero INTERGENIC
SBS Chr11 7624368 G-T Homo INTERGENIC
SBS Chr11 9017470 C-T Hetero INTERGENIC
SBS Chr11 10382514 G-A Hetero INTERGENIC
SBS Chr11 26844347 G-A Homo INTERGENIC
SBS Chr12 8489563 C-T Hetero INTERGENIC
SBS Chr12 10433076 G-A Homo INTERGENIC
SBS Chr12 24705657 G-T Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2971208 2971218 10
Deletion Chr1 4095455 4095457 2
Deletion Chr8 5216640 5216655 15
Deletion Chr2 6932554 6932556 2
Deletion Chr1 9119731 9119754 23
Deletion Chr12 9555941 9555942 1
Deletion Chr2 10487557 10487558 1
Deletion Chr4 11331049 11331055 6
Deletion Chr2 12827374 12827387 13 OsKitaake02g143700
Deletion Chr1 17242104 17242106 2
Deletion Chr7 18906381 18906383 2
Deletion Chr12 19231025 19231026 1
Deletion Chr6 22695089 22695093 4
Deletion Chr12 25416630 25416643 13
Deletion Chr5 29401543 29401545 2
Deletion Chr3 30809281 30809282 1 OsKitaake03g323300
Deletion Chr4 35473001 35581000 107999 23
Deletion Chr1 43058320 43058321 1 OsKitaake01g475100

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1716285 1716288 2
Insertion Chr5 682899 682902 2
Insertion Chr6 27159804 27159818 13
Insertion Chr2 14377552 14377554 1 OsKitaake02g155500

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 15344895 15606040 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 35367076 Chr1 15344895 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8885311	T-C	Homo	INTERGENIC
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr1	33265402	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	36990382	T-C	Hetero	INTERGENIC
SBS	Chr2	921623	C-G	Hetero	SPLICE_SITE_REGION
SBS	Chr2	10540126	G-T	Homo	INTERGENIC
SBS	Chr2	24452022	C-T	Homo	INTERGENIC
SBS	Chr2	34963868	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g365000
SBS	Chr3	6094662	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g087400
SBS	Chr3	9712047	T-C	Hetero	INTERGENIC
SBS	Chr3	11202711	C-T	Hetero	INTRON
SBS	Chr3	32072158	G-A	Hetero	INTERGENIC
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr4	831267	G-T	Homo	INTERGENIC
SBS	Chr5	4317742	G-T	Hetero	INTERGENIC
SBS	Chr5	27501722	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	29066241	T-A	Hetero	INTRON
SBS	Chr5	29707514	G-A	Hetero	INTERGENIC
SBS	Chr6	8654753	T-C	Hetero	INTERGENIC
SBS	Chr6	11683681	C-A	Hetero	INTERGENIC
SBS	Chr6	13335423	A-T	Hetero	INTERGENIC
SBS	Chr6	19844234	A-C	Hetero	INTERGENIC
SBS	Chr6	25781570	C-T	Hetero	INTERGENIC
SBS	Chr7	9372739	C-A	Hetero	INTERGENIC
SBS	Chr7	10529822	C-T	Hetero	INTERGENIC
SBS	Chr7	16045365	T-A	Hetero	INTERGENIC
SBS	Chr7	17105969	C-T	Hetero	INTERGENIC
SBS	Chr7	25234264	C-T	Hetero	INTERGENIC
SBS	Chr7	29236492	A-G	Hetero	INTERGENIC
SBS	Chr8	3835949	G-A	Homo	INTERGENIC
SBS	Chr8	11126599	T-C	Hetero	INTERGENIC
SBS	Chr8	18069731	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	23741741	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	24997061	G-A	Hetero	INTERGENIC
SBS	Chr9	8489738	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g050100
SBS	Chr9	8761780	G-A	Hetero	INTERGENIC
SBS	Chr9	13287374	C-T	Hetero	INTERGENIC
SBS	Chr10	5552560	C-T	Hetero	INTERGENIC
SBS	Chr10	7588468	T-G	Hetero	INTERGENIC
SBS	Chr10	18579478	C-T	Hetero	INTERGENIC
SBS	Chr11	7624368	G-T	Homo	INTERGENIC
SBS	Chr11	9017470	C-T	Hetero	INTERGENIC
SBS	Chr11	10382514	G-A	Hetero	INTERGENIC
SBS	Chr11	26844347	G-A	Homo	INTERGENIC
SBS	Chr12	8489563	C-T	Hetero	INTERGENIC
SBS	Chr12	10433076	G-A	Homo	INTERGENIC
SBS	Chr12	24705657	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2971208	2971218	10
Deletion	Chr1	4095455	4095457	2
Deletion	Chr8	5216640	5216655	15
Deletion	Chr2	6932554	6932556	2
Deletion	Chr1	9119731	9119754	23
Deletion	Chr12	9555941	9555942	1
Deletion	Chr2	10487557	10487558	1
Deletion	Chr4	11331049	11331055	6
Deletion	Chr2	12827374	12827387	13	OsKitaake02g143700
Deletion	Chr1	17242104	17242106	2
Deletion	Chr7	18906381	18906383	2
Deletion	Chr12	19231025	19231026	1
Deletion	Chr6	22695089	22695093	4
Deletion	Chr12	25416630	25416643	13
Deletion	Chr5	29401543	29401545	2
Deletion	Chr3	30809281	30809282	1	OsKitaake03g323300
Deletion	Chr4	35473001	35581000	107999	23
Deletion	Chr1	43058320	43058321	1	OsKitaake01g475100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	15344895	15606040	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes