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Mutant Information

Mutant Name	FN1622-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1622-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3856590 G-T Hetero INTERGENIC
SBS Chr1 5734162 C-A Hetero INTERGENIC
SBS Chr1 13388417 G-T Homo INTERGENIC
SBS Chr1 24135691 A-T Homo INTRON
SBS Chr1 24135693 G-T Homo INTRON
SBS Chr1 26263456 C-A Homo INTERGENIC
SBS Chr2 15482843 A-C Hetero INTERGENIC
SBS Chr2 19787784 C-T Homo INTERGENIC
SBS Chr3 6424609 C-G Hetero INTERGENIC
SBS Chr4 3343925 A-G Hetero INTERGENIC
SBS Chr4 11365873 A-G Homo INTERGENIC
SBS Chr4 14561632 G-T Homo INTERGENIC
SBS Chr4 24298063 C-A Homo INTRON
SBS Chr5 22200551 C-T Hetero INTERGENIC
SBS Chr5 26715012 G-C Hetero INTERGENIC
SBS Chr6 678236 G-A Hetero UTR_5_PRIME
SBS Chr6 5887036 G-A Hetero INTERGENIC
SBS Chr6 17695055 T-A Hetero INTERGENIC
SBS Chr6 23289987 G-A Hetero INTERGENIC
SBS Chr7 20180761 T-C Homo INTERGENIC
SBS Chr9 17625861 C-T Hetero INTERGENIC
SBS Chr10 6267430 G-A Hetero INTERGENIC
SBS Chr10 16149136 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g107900
SBS Chr10 23859769 A-G Homo UTR_3_PRIME
SBS Chr11 14587971 C-G Hetero INTERGENIC
SBS Chr11 22492219 G-C Hetero INTERGENIC
SBS Chr11 26128254 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g211100
SBS Chr11 28863280 A-T Hetero INTRON
SBS Chr12 3700732 C-T Hetero INTERGENIC
SBS Chr12 20870179 C-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2237249 2237253 4
Deletion Chr11 2604166 2604167 1
Deletion Chr12 8266190 8266191 1
Deletion Chr1 13335184 13335192 8
Deletion Chr11 14608001 14680000 71999 3
Deletion Chr10 15865507 15865828 321 OsKitaake10g103600
Deletion Chr2 17507529 17507538 9
Deletion Chr3 17519001 17757000 237999 18
Deletion Chr2 24359658 24359664 6
Deletion Chr2 25411877 25411882 5
Deletion Chr2 31218450 31218462 12
Deletion Chr1 31482133 31482211 78 OsKitaake01g316000

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13765011 13765014 2
Insertion Chr1 22728723 22728726 2
Insertion Chr3 27223694 27223697 2
Insertion Chr4 8980483 8980491 7
Insertion Chr5 2435481 2435484 2
Insertion Chr9 11655601 11655605 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 14605775 14727155
Inversion Chr11 14676975 14727152

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 6757011 Chr4 12112377
Translocation Chr4 11939048 Chr2 11456863

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3856590	G-T	Hetero	INTERGENIC
SBS	Chr1	5734162	C-A	Hetero	INTERGENIC
SBS	Chr1	13388417	G-T	Homo	INTERGENIC
SBS	Chr1	24135691	A-T	Homo	INTRON
SBS	Chr1	24135693	G-T	Homo	INTRON
SBS	Chr1	26263456	C-A	Homo	INTERGENIC
SBS	Chr2	15482843	A-C	Hetero	INTERGENIC
SBS	Chr2	19787784	C-T	Homo	INTERGENIC
SBS	Chr3	6424609	C-G	Hetero	INTERGENIC
SBS	Chr4	3343925	A-G	Hetero	INTERGENIC
SBS	Chr4	11365873	A-G	Homo	INTERGENIC
SBS	Chr4	14561632	G-T	Homo	INTERGENIC
SBS	Chr4	24298063	C-A	Homo	INTRON
SBS	Chr5	22200551	C-T	Hetero	INTERGENIC
SBS	Chr5	26715012	G-C	Hetero	INTERGENIC
SBS	Chr6	678236	G-A	Hetero	UTR_5_PRIME
SBS	Chr6	5887036	G-A	Hetero	INTERGENIC
SBS	Chr6	17695055	T-A	Hetero	INTERGENIC
SBS	Chr6	23289987	G-A	Hetero	INTERGENIC
SBS	Chr7	20180761	T-C	Homo	INTERGENIC
SBS	Chr9	17625861	C-T	Hetero	INTERGENIC
SBS	Chr10	6267430	G-A	Hetero	INTERGENIC
SBS	Chr10	16149136	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g107900
SBS	Chr10	23859769	A-G	Homo	UTR_3_PRIME
SBS	Chr11	14587971	C-G	Hetero	INTERGENIC
SBS	Chr11	22492219	G-C	Hetero	INTERGENIC
SBS	Chr11	26128254	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g211100
SBS	Chr11	28863280	A-T	Hetero	INTRON
SBS	Chr12	3700732	C-T	Hetero	INTERGENIC
SBS	Chr12	20870179	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2237249	2237253	4
Deletion	Chr11	2604166	2604167	1
Deletion	Chr12	8266190	8266191	1
Deletion	Chr1	13335184	13335192	8
Deletion	Chr11	14608001	14680000	71999	3
Deletion	Chr10	15865507	15865828	321	OsKitaake10g103600
Deletion	Chr2	17507529	17507538	9
Deletion	Chr3	17519001	17757000	237999	18
Deletion	Chr2	24359658	24359664	6
Deletion	Chr2	25411877	25411882	5
Deletion	Chr2	31218450	31218462	12
Deletion	Chr1	31482133	31482211	78	OsKitaake01g316000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14605775	14727155
Inversion	Chr11	14676975	14727152

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes