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Mutant Information

Mutant Name	FN1623-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1623-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20017977 A-C Homo INTERGENIC
SBS Chr1 23516340 T-A Homo INTERGENIC
SBS Chr1 29369413 A-T Homo INTERGENIC
SBS Chr1 39780248 C-T Homo INTRON
SBS Chr1 41728547 T-A Homo INTERGENIC
SBS Chr2 12600188 T-C Homo INTERGENIC
SBS Chr3 11405542 C-T Hetero INTERGENIC
SBS Chr3 23495067 C-T Homo UTR_5_PRIME
SBS Chr3 35715758 A-C Hetero INTERGENIC
SBS Chr3 36651024 C-A Hetero INTERGENIC
SBS Chr4 1538502 C-T Homo INTERGENIC
SBS Chr4 2340233 C-T Hetero INTERGENIC
SBS Chr4 11479140 C-T Homo INTERGENIC
SBS Chr5 7692948 G-A Hetero INTERGENIC
SBS Chr6 4439203 G-A Hetero INTERGENIC
SBS Chr6 20452089 A-T Homo INTERGENIC
SBS Chr6 20927064 C-T Homo INTERGENIC
SBS Chr6 27630166 C-G Hetero INTERGENIC
SBS Chr7 251858 A-C Homo NON_SYNONYMOUS_CODING OsKitaake07g002100
SBS Chr7 251860 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g002100
SBS Chr7 1800696 G-T Hetero INTERGENIC
SBS Chr7 5759599 A-T Hetero INTERGENIC
SBS Chr7 14396634 C-T Homo INTERGENIC
SBS Chr8 12028306 G-A Homo INTRON
SBS Chr8 21249242 C-T Homo INTERGENIC
SBS Chr8 26003241 A-G Hetero INTERGENIC
SBS Chr9 3977037 C-A Homo INTERGENIC
SBS Chr9 6102234 G-A Homo INTERGENIC
SBS Chr9 8851579 A-G Hetero INTERGENIC
SBS Chr9 19219722 A-T Hetero INTERGENIC
SBS Chr10 2208738 A-T Homo INTERGENIC
SBS Chr10 5813553 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr10 8641238 C-T Hetero INTERGENIC
SBS Chr11 7023175 T-A Hetero INTRON
SBS Chr11 9071735 G-C Hetero INTRON
SBS Chr11 20839643 A-G Hetero INTERGENIC
SBS Chr12 8493162 G-T Hetero INTERGENIC
SBS Chr12 12010710 A-T Hetero SYNONYMOUS_CODING
SBS Chr12 19051634 G-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 612278 612279 1
Deletion Chr10 742712 742719 7
Deletion Chr9 1112084 1112089 5
Deletion Chr9 2665217 2665222 5
Deletion Chr11 2782934 2782936 2
Deletion Chr12 9876637 9876783 146
Deletion Chr4 11302001 11530000 227999 OsKitaake04g056800
Deletion Chr8 14775521 14775534 13
Deletion Chr6 15734956 15734957 1
Deletion Chr4 18155938 18155939 1
Deletion Chr6 18846522 18846535 13
Deletion Chr8 20832993 20832994 1
Deletion Chr1 21441793 21441796 3
Deletion Chr3 23261304 23261311 7
Deletion Chr6 23656289 23656299 10
Deletion Chr7 23879777 23879778 1
Deletion Chr8 24469783 24469785 2
Deletion Chr6 24941903 24941906 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 1701110 1701113 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 21774626 22481375
Inversion Chr3 21774631 22481386

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20017977	A-C	Homo	INTERGENIC
SBS	Chr1	23516340	T-A	Homo	INTERGENIC
SBS	Chr1	29369413	A-T	Homo	INTERGENIC
SBS	Chr1	39780248	C-T	Homo	INTRON
SBS	Chr1	41728547	T-A	Homo	INTERGENIC
SBS	Chr2	12600188	T-C	Homo	INTERGENIC
SBS	Chr3	11405542	C-T	Hetero	INTERGENIC
SBS	Chr3	23495067	C-T	Homo	UTR_5_PRIME
SBS	Chr3	35715758	A-C	Hetero	INTERGENIC
SBS	Chr3	36651024	C-A	Hetero	INTERGENIC
SBS	Chr4	1538502	C-T	Homo	INTERGENIC
SBS	Chr4	2340233	C-T	Hetero	INTERGENIC
SBS	Chr4	11479140	C-T	Homo	INTERGENIC
SBS	Chr5	7692948	G-A	Hetero	INTERGENIC
SBS	Chr6	4439203	G-A	Hetero	INTERGENIC
SBS	Chr6	20452089	A-T	Homo	INTERGENIC
SBS	Chr6	20927064	C-T	Homo	INTERGENIC
SBS	Chr6	27630166	C-G	Hetero	INTERGENIC
SBS	Chr7	251858	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g002100
SBS	Chr7	251860	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g002100
SBS	Chr7	1800696	G-T	Hetero	INTERGENIC
SBS	Chr7	5759599	A-T	Hetero	INTERGENIC
SBS	Chr7	14396634	C-T	Homo	INTERGENIC
SBS	Chr8	12028306	G-A	Homo	INTRON
SBS	Chr8	21249242	C-T	Homo	INTERGENIC
SBS	Chr8	26003241	A-G	Hetero	INTERGENIC
SBS	Chr9	3977037	C-A	Homo	INTERGENIC
SBS	Chr9	6102234	G-A	Homo	INTERGENIC
SBS	Chr9	8851579	A-G	Hetero	INTERGENIC
SBS	Chr9	19219722	A-T	Hetero	INTERGENIC
SBS	Chr10	2208738	A-T	Homo	INTERGENIC
SBS	Chr10	5813553	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr10	8641238	C-T	Hetero	INTERGENIC
SBS	Chr11	7023175	T-A	Hetero	INTRON
SBS	Chr11	9071735	G-C	Hetero	INTRON
SBS	Chr11	20839643	A-G	Hetero	INTERGENIC
SBS	Chr12	8493162	G-T	Hetero	INTERGENIC
SBS	Chr12	12010710	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	19051634	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	612278	612279	1
Deletion	Chr10	742712	742719	7
Deletion	Chr9	1112084	1112089	5
Deletion	Chr9	2665217	2665222	5
Deletion	Chr11	2782934	2782936	2
Deletion	Chr12	9876637	9876783	146
Deletion	Chr4	11302001	11530000	227999	OsKitaake04g056800
Deletion	Chr8	14775521	14775534	13
Deletion	Chr6	15734956	15734957	1
Deletion	Chr4	18155938	18155939	1
Deletion	Chr6	18846522	18846535	13
Deletion	Chr8	20832993	20832994	1
Deletion	Chr1	21441793	21441796	3
Deletion	Chr3	23261304	23261311	7
Deletion	Chr6	23656289	23656299	10
Deletion	Chr7	23879777	23879778	1
Deletion	Chr8	24469783	24469785	2
Deletion	Chr6	24941903	24941906	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	21774626	22481375
Inversion	Chr3	21774631	22481386

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes