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Mutant Information

Mutant Name	FN1625-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1625-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6517013 G-A Hetero INTRON
SBS Chr1 17650810 C-T Hetero INTERGENIC
SBS Chr1 21203857 C-T Hetero INTERGENIC
SBS Chr1 30267223 T-C Hetero INTERGENIC
SBS Chr1 43430331 G-C Homo INTERGENIC
SBS Chr1 44208754 C-T Hetero INTERGENIC
SBS Chr2 8232155 C-A Hetero INTERGENIC
SBS Chr2 23268077 C-A Hetero INTERGENIC
SBS Chr2 33169288 T-A Hetero INTERGENIC
SBS Chr3 6181164 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g088500
SBS Chr4 22858452 G-A Homo INTERGENIC
SBS Chr5 11182849 G-T Hetero INTERGENIC
SBS Chr5 14073658 C-G Hetero INTERGENIC
SBS Chr5 15163006 C-T Hetero INTERGENIC
SBS Chr5 20690061 C-T Hetero INTERGENIC
SBS Chr5 28073381 C-G Hetero INTERGENIC
SBS Chr6 4897878 G-A Hetero INTERGENIC
SBS Chr6 22671258 G-A Homo INTERGENIC
SBS Chr6 27111968 A-C Hetero INTERGENIC
SBS Chr6 27669397 A-T Hetero INTERGENIC
SBS Chr6 27956663 T-C Hetero INTERGENIC
SBS Chr7 2624201 G-A Homo INTERGENIC
SBS Chr7 22046770 G-A Homo INTERGENIC
SBS Chr7 29437524 C-T Hetero INTERGENIC
SBS Chr8 5279016 A-G Hetero INTERGENIC
SBS Chr8 25946405 C-T Hetero INTERGENIC
SBS Chr8 25994449 C-T Hetero INTERGENIC
SBS Chr9 548858 C-T Hetero INTERGENIC
SBS Chr9 6256173 C-T Hetero INTERGENIC
SBS Chr9 13667792 T-C Hetero INTERGENIC
SBS Chr9 15261156 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g106700
SBS Chr9 18319096 G-A Homo INTERGENIC
SBS Chr9 18319097 G-A Homo INTERGENIC
SBS Chr10 978901 A-G Hetero INTERGENIC
SBS Chr10 1035501 C-T Hetero INTERGENIC
SBS Chr10 5870774 A-C Hetero INTRON
SBS Chr10 12940788 C-T Homo INTERGENIC
SBS Chr10 20467505 A-C Homo STOP_LOST OsKitaake10g156700
SBS Chr11 1362368 C-A Homo SYNONYMOUS_CODING
SBS Chr11 1362369 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g017300
SBS Chr11 10217581 A-G Homo UTR_3_PRIME
SBS Chr11 28379698 G-A Homo INTERGENIC
SBS Chr12 1154999 A-T Hetero UTR_3_PRIME
SBS Chr12 5170411 C-T Hetero SPLICE_SITE_REGION
SBS Chr12 7306480 T-G Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 163145 163147 2
Deletion Chr1 2460973 2460987 14 OsKitaake01g031200
Deletion Chr8 2704318 2704327 9
Deletion Chr2 2922284 2922301 17
Deletion Chr2 4019689 4019691 2
Deletion Chr2 4770001 4853000 82999 10
Deletion Chr1 10259495 10259502 7
Deletion Chr9 13434001 13508000 73999 9
Deletion Chr3 14939949 14939950 1
Deletion Chr8 17324261 17324262 1
Deletion Chr6 19285766 19285767 1
Deletion Chr6 20070426 20070430 4
Deletion Chr11 23173815 23173817 2
Deletion Chr7 25308875 25308877 2
Deletion Chr2 33341847 33341865 18
Deletion Chr2 36929001 37005000 75999 17

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 836714 1423726 OsKitaake12g021400
Inversion Chr8 19414533 19814989
Inversion Chr8 19414544 19815006
Inversion Chr6 25658224 25660936

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1927801 Chr1 41979412 OsKitaake11g026900
Translocation Chr11 1927972 Chr1 41979403 OsKitaake11g026900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6517013	G-A	Hetero	INTRON
SBS	Chr1	17650810	C-T	Hetero	INTERGENIC
SBS	Chr1	21203857	C-T	Hetero	INTERGENIC
SBS	Chr1	30267223	T-C	Hetero	INTERGENIC
SBS	Chr1	43430331	G-C	Homo	INTERGENIC
SBS	Chr1	44208754	C-T	Hetero	INTERGENIC
SBS	Chr2	8232155	C-A	Hetero	INTERGENIC
SBS	Chr2	23268077	C-A	Hetero	INTERGENIC
SBS	Chr2	33169288	T-A	Hetero	INTERGENIC
SBS	Chr3	6181164	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g088500
SBS	Chr4	22858452	G-A	Homo	INTERGENIC
SBS	Chr5	11182849	G-T	Hetero	INTERGENIC
SBS	Chr5	14073658	C-G	Hetero	INTERGENIC
SBS	Chr5	15163006	C-T	Hetero	INTERGENIC
SBS	Chr5	20690061	C-T	Hetero	INTERGENIC
SBS	Chr5	28073381	C-G	Hetero	INTERGENIC
SBS	Chr6	4897878	G-A	Hetero	INTERGENIC
SBS	Chr6	22671258	G-A	Homo	INTERGENIC
SBS	Chr6	27111968	A-C	Hetero	INTERGENIC
SBS	Chr6	27669397	A-T	Hetero	INTERGENIC
SBS	Chr6	27956663	T-C	Hetero	INTERGENIC
SBS	Chr7	2624201	G-A	Homo	INTERGENIC
SBS	Chr7	22046770	G-A	Homo	INTERGENIC
SBS	Chr7	29437524	C-T	Hetero	INTERGENIC
SBS	Chr8	5279016	A-G	Hetero	INTERGENIC
SBS	Chr8	25946405	C-T	Hetero	INTERGENIC
SBS	Chr8	25994449	C-T	Hetero	INTERGENIC
SBS	Chr9	548858	C-T	Hetero	INTERGENIC
SBS	Chr9	6256173	C-T	Hetero	INTERGENIC
SBS	Chr9	13667792	T-C	Hetero	INTERGENIC
SBS	Chr9	15261156	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g106700
SBS	Chr9	18319096	G-A	Homo	INTERGENIC
SBS	Chr9	18319097	G-A	Homo	INTERGENIC
SBS	Chr10	978901	A-G	Hetero	INTERGENIC
SBS	Chr10	1035501	C-T	Hetero	INTERGENIC
SBS	Chr10	5870774	A-C	Hetero	INTRON
SBS	Chr10	12940788	C-T	Homo	INTERGENIC
SBS	Chr10	20467505	A-C	Homo	STOP_LOST	OsKitaake10g156700
SBS	Chr11	1362368	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	1362369	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g017300
SBS	Chr11	10217581	A-G	Homo	UTR_3_PRIME
SBS	Chr11	28379698	G-A	Homo	INTERGENIC
SBS	Chr12	1154999	A-T	Hetero	UTR_3_PRIME
SBS	Chr12	5170411	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr12	7306480	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	163145	163147	2
Deletion	Chr1	2460973	2460987	14	OsKitaake01g031200
Deletion	Chr8	2704318	2704327	9
Deletion	Chr2	2922284	2922301	17
Deletion	Chr2	4019689	4019691	2
Deletion	Chr2	4770001	4853000	82999	10
Deletion	Chr1	10259495	10259502	7
Deletion	Chr9	13434001	13508000	73999	9
Deletion	Chr3	14939949	14939950	1
Deletion	Chr8	17324261	17324262	1
Deletion	Chr6	19285766	19285767	1
Deletion	Chr6	20070426	20070430	4
Deletion	Chr11	23173815	23173817	2
Deletion	Chr7	25308875	25308877	2
Deletion	Chr2	33341847	33341865	18
Deletion	Chr2	36929001	37005000	75999	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	836714	1423726	OsKitaake12g021400
Inversion	Chr8	19414533	19814989
Inversion	Chr8	19414544	19815006
Inversion	Chr6	25658224	25660936

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes