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Mutant Information

Mutant Name	FN1630-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1630-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22330973 G-A Homo INTRON
SBS Chr2 11601975 T-G Homo INTERGENIC
SBS Chr2 28255013 G-C Homo INTERGENIC
SBS Chr2 33407215 C-A Hetero INTERGENIC
SBS Chr3 480360 G-T Hetero UTR_5_PRIME
SBS Chr3 5290277 A-G Hetero SYNONYMOUS_CODING
SBS Chr3 14208330 T-C Hetero INTERGENIC
SBS Chr3 20314048 T-C Hetero INTERGENIC
SBS Chr3 28017531 C-T Hetero INTRON
SBS Chr4 2762627 T-G Hetero INTERGENIC
SBS Chr4 14908611 G-A Homo INTERGENIC
SBS Chr4 17115010 G-A Hetero INTERGENIC
SBS Chr4 22904004 T-A Homo INTERGENIC
SBS Chr4 25228003 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g170600
SBS Chr5 3559787 C-T Hetero INTERGENIC
SBS Chr5 7101017 G-A Hetero INTERGENIC
SBS Chr5 18867841 T-C Hetero INTERGENIC
SBS Chr5 20610674 T-A Homo INTERGENIC
SBS Chr5 20916175 C-T Homo INTERGENIC
SBS Chr5 24179781 C-T Homo INTRON
SBS Chr5 24179785 A-T Homo INTRON
SBS Chr5 26521983 A-C Homo INTRON
SBS Chr5 27686137 G-A Hetero INTERGENIC
SBS Chr5 27920246 C-T Hetero INTRON
SBS Chr6 7391981 G-A Homo UTR_3_PRIME
SBS Chr6 20508951 G-A Hetero INTERGENIC
SBS Chr7 9810875 A-G Hetero INTERGENIC
SBS Chr7 12549496 C-T Hetero INTERGENIC
SBS Chr7 17089196 C-T Hetero INTERGENIC
SBS Chr7 18760641 G-T Hetero INTERGENIC
SBS Chr7 18760642 A-T Hetero INTERGENIC
SBS Chr7 18760647 C-T Hetero INTERGENIC
SBS Chr7 26663625 A-C Hetero INTERGENIC
SBS Chr7 27398021 T-G Hetero INTERGENIC
SBS Chr8 6571365 G-T Hetero INTERGENIC
SBS Chr8 7839955 C-T Hetero INTRON
SBS Chr8 8581098 G-A Homo INTERGENIC
SBS Chr8 14621228 G-A Hetero INTERGENIC
SBS Chr8 16525407 T-C Hetero INTERGENIC
SBS Chr8 16555394 G-A Hetero INTRON
SBS Chr8 24800032 G-A Hetero UTR_5_PRIME
SBS Chr9 3694949 G-T Hetero INTERGENIC
SBS Chr9 4099703 C-A Hetero UTR_5_PRIME
SBS Chr10 17368704 G-A Hetero INTERGENIC
SBS Chr10 21496213 C-T Hetero INTERGENIC
SBS Chr11 9829878 G-A Hetero INTERGENIC
SBS Chr11 10432776 C-G Hetero INTERGENIC
SBS Chr11 14291272 T-C Hetero INTRON
SBS Chr11 17940257 G-A Hetero INTRON
SBS Chr11 19996603 A-G Hetero INTERGENIC
SBS Chr11 20507639 T-C Hetero INTERGENIC
SBS Chr11 21095637 T-A Homo INTERGENIC
SBS Chr12 5955237 C-T Homo INTERGENIC
SBS Chr12 7804522 T-C Hetero INTERGENIC
SBS Chr12 17189677 G-T Hetero INTERGENIC
SBS Chr12 18387953 G-T Hetero INTERGENIC
SBS Chr12 19962558 C-A Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 452636 452644 8
Deletion Chr10 868636 868637 1
Deletion Chr7 1896097 1896099 2
Deletion Chr2 3817219 3817220 1
Deletion Chr2 3943556 3943568 12
Deletion Chr2 4054451 4054455 4
Deletion Chr5 5309962 5309983 21
Deletion Chr5 7050001 7054000 3999 OsKitaake05g070900
Deletion Chr6 7187338 7187346 8
Deletion Chr10 8991851 8991857 6
Deletion Chr11 12133777 12133785 8
Deletion Chr3 13075738 13075741 3
Deletion Chr1 15381948 15381956 8
Deletion Chr7 16121304 16121305 1
Deletion Chr5 16329145 16329148 3
Deletion Chr11 16969748 16969749 1
Deletion Chr2 18402626 18402628 2
Deletion Chr7 18710709 18710711 2
Deletion Chr5 24322001 24376000 53999 8
Deletion Chr7 25766543 25766544 1
Deletion Chr1 32653193 32653196 3
Deletion Chr3 34912878 34912881 3
Deletion Chr3 35522094 35522099 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 5713105 5713108 2
Insertion Chr4 11077459 11077461 1
Insertion Chr5 12965974 12965976 1 OsKitaake05g100400
Insertion Chr12 10853863 10853868 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22330973	G-A	Homo	INTRON
SBS	Chr2	11601975	T-G	Homo	INTERGENIC
SBS	Chr2	28255013	G-C	Homo	INTERGENIC
SBS	Chr2	33407215	C-A	Hetero	INTERGENIC
SBS	Chr3	480360	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	5290277	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	14208330	T-C	Hetero	INTERGENIC
SBS	Chr3	20314048	T-C	Hetero	INTERGENIC
SBS	Chr3	28017531	C-T	Hetero	INTRON
SBS	Chr4	2762627	T-G	Hetero	INTERGENIC
SBS	Chr4	14908611	G-A	Homo	INTERGENIC
SBS	Chr4	17115010	G-A	Hetero	INTERGENIC
SBS	Chr4	22904004	T-A	Homo	INTERGENIC
SBS	Chr4	25228003	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g170600
SBS	Chr5	3559787	C-T	Hetero	INTERGENIC
SBS	Chr5	7101017	G-A	Hetero	INTERGENIC
SBS	Chr5	18867841	T-C	Hetero	INTERGENIC
SBS	Chr5	20610674	T-A	Homo	INTERGENIC
SBS	Chr5	20916175	C-T	Homo	INTERGENIC
SBS	Chr5	24179781	C-T	Homo	INTRON
SBS	Chr5	24179785	A-T	Homo	INTRON
SBS	Chr5	26521983	A-C	Homo	INTRON
SBS	Chr5	27686137	G-A	Hetero	INTERGENIC
SBS	Chr5	27920246	C-T	Hetero	INTRON
SBS	Chr6	7391981	G-A	Homo	UTR_3_PRIME
SBS	Chr6	20508951	G-A	Hetero	INTERGENIC
SBS	Chr7	9810875	A-G	Hetero	INTERGENIC
SBS	Chr7	12549496	C-T	Hetero	INTERGENIC
SBS	Chr7	17089196	C-T	Hetero	INTERGENIC
SBS	Chr7	18760641	G-T	Hetero	INTERGENIC
SBS	Chr7	18760642	A-T	Hetero	INTERGENIC
SBS	Chr7	18760647	C-T	Hetero	INTERGENIC
SBS	Chr7	26663625	A-C	Hetero	INTERGENIC
SBS	Chr7	27398021	T-G	Hetero	INTERGENIC
SBS	Chr8	6571365	G-T	Hetero	INTERGENIC
SBS	Chr8	7839955	C-T	Hetero	INTRON
SBS	Chr8	8581098	G-A	Homo	INTERGENIC
SBS	Chr8	14621228	G-A	Hetero	INTERGENIC
SBS	Chr8	16525407	T-C	Hetero	INTERGENIC
SBS	Chr8	16555394	G-A	Hetero	INTRON
SBS	Chr8	24800032	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	3694949	G-T	Hetero	INTERGENIC
SBS	Chr9	4099703	C-A	Hetero	UTR_5_PRIME
SBS	Chr10	17368704	G-A	Hetero	INTERGENIC
SBS	Chr10	21496213	C-T	Hetero	INTERGENIC
SBS	Chr11	9829878	G-A	Hetero	INTERGENIC
SBS	Chr11	10432776	C-G	Hetero	INTERGENIC
SBS	Chr11	14291272	T-C	Hetero	INTRON
SBS	Chr11	17940257	G-A	Hetero	INTRON
SBS	Chr11	19996603	A-G	Hetero	INTERGENIC
SBS	Chr11	20507639	T-C	Hetero	INTERGENIC
SBS	Chr11	21095637	T-A	Homo	INTERGENIC
SBS	Chr12	5955237	C-T	Homo	INTERGENIC
SBS	Chr12	7804522	T-C	Hetero	INTERGENIC
SBS	Chr12	17189677	G-T	Hetero	INTERGENIC
SBS	Chr12	18387953	G-T	Hetero	INTERGENIC
SBS	Chr12	19962558	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	452636	452644	8
Deletion	Chr10	868636	868637	1
Deletion	Chr7	1896097	1896099	2
Deletion	Chr2	3817219	3817220	1
Deletion	Chr2	3943556	3943568	12
Deletion	Chr2	4054451	4054455	4
Deletion	Chr5	5309962	5309983	21
Deletion	Chr5	7050001	7054000	3999	OsKitaake05g070900
Deletion	Chr6	7187338	7187346	8
Deletion	Chr10	8991851	8991857	6
Deletion	Chr11	12133777	12133785	8
Deletion	Chr3	13075738	13075741	3
Deletion	Chr1	15381948	15381956	8
Deletion	Chr7	16121304	16121305	1
Deletion	Chr5	16329145	16329148	3
Deletion	Chr11	16969748	16969749	1
Deletion	Chr2	18402626	18402628	2
Deletion	Chr7	18710709	18710711	2
Deletion	Chr5	24322001	24376000	53999	8
Deletion	Chr7	25766543	25766544	1
Deletion	Chr1	32653193	32653196	3
Deletion	Chr3	34912878	34912881	3
Deletion	Chr3	35522094	35522099	5

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes