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Mutant Information

Mutant Name	FN1631-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1631-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 5594922 A-T Homo UTR_3_PRIME
SBS Chr2 19575816 T-A Homo INTERGENIC
SBS Chr2 30223050 C-A Homo INTRON
SBS Chr3 777623 G-A Hetero STOP_GAINED OsKitaake03g012200
SBS Chr3 22802083 C-A Homo INTERGENIC
SBS Chr3 25359068 C-T Homo INTERGENIC
SBS Chr3 27521266 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g284200
SBS Chr4 33409 G-C Hetero INTERGENIC
SBS Chr4 6863547 G-A Hetero INTERGENIC
SBS Chr4 7395578 A-G Hetero INTERGENIC
SBS Chr4 10320130 T-A Hetero INTERGENIC
SBS Chr4 22529843 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g133200
SBS Chr4 29122372 C-T Hetero UTR_3_PRIME
SBS Chr5 7472711 C-T Hetero INTERGENIC
SBS Chr5 15996727 C-T Hetero INTERGENIC
SBS Chr5 25807953 C-T Homo INTRON
SBS Chr5 25807954 G-T Homo INTRON
SBS Chr6 11443260 T-C Homo INTERGENIC
SBS Chr7 20405264 A-G Homo INTERGENIC
SBS Chr8 5983286 G-C Homo INTERGENIC
SBS Chr9 3473629 C-A Hetero INTERGENIC
SBS Chr9 7498110 G-A Hetero INTERGENIC
SBS Chr9 11131758 G-C Homo INTERGENIC
SBS Chr9 18400236 C-T Homo INTERGENIC
SBS Chr11 3192929 C-A Homo INTERGENIC
SBS Chr11 8966386 C-G Hetero INTERGENIC
SBS Chr11 28746082 C-T Hetero INTERGENIC
SBS Chr12 19586567 A-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 9256002 9256017 15
Deletion Chr6 11922830 11922838 8
Deletion Chr7 12540967 12540969 2
Deletion Chr1 13520480 13520481 1
Deletion Chr8 20696084 20696091 7
Deletion Chr9 21060780 21060784 4
Deletion Chr2 21126653 21126654 1
Deletion Chr1 23159266 23159269 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 8267973 8267982 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	5594922	A-T	Homo	UTR_3_PRIME
SBS	Chr2	19575816	T-A	Homo	INTERGENIC
SBS	Chr2	30223050	C-A	Homo	INTRON
SBS	Chr3	777623	G-A	Hetero	STOP_GAINED	OsKitaake03g012200
SBS	Chr3	22802083	C-A	Homo	INTERGENIC
SBS	Chr3	25359068	C-T	Homo	INTERGENIC
SBS	Chr3	27521266	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g284200
SBS	Chr4	33409	G-C	Hetero	INTERGENIC
SBS	Chr4	6863547	G-A	Hetero	INTERGENIC
SBS	Chr4	7395578	A-G	Hetero	INTERGENIC
SBS	Chr4	10320130	T-A	Hetero	INTERGENIC
SBS	Chr4	22529843	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g133200
SBS	Chr4	29122372	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	7472711	C-T	Hetero	INTERGENIC
SBS	Chr5	15996727	C-T	Hetero	INTERGENIC
SBS	Chr5	25807953	C-T	Homo	INTRON
SBS	Chr5	25807954	G-T	Homo	INTRON
SBS	Chr6	11443260	T-C	Homo	INTERGENIC
SBS	Chr7	20405264	A-G	Homo	INTERGENIC
SBS	Chr8	5983286	G-C	Homo	INTERGENIC
SBS	Chr9	3473629	C-A	Hetero	INTERGENIC
SBS	Chr9	7498110	G-A	Hetero	INTERGENIC
SBS	Chr9	11131758	G-C	Homo	INTERGENIC
SBS	Chr9	18400236	C-T	Homo	INTERGENIC
SBS	Chr11	3192929	C-A	Homo	INTERGENIC
SBS	Chr11	8966386	C-G	Hetero	INTERGENIC
SBS	Chr11	28746082	C-T	Hetero	INTERGENIC
SBS	Chr12	19586567	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	9256002	9256017	15
Deletion	Chr6	11922830	11922838	8
Deletion	Chr7	12540967	12540969	2
Deletion	Chr1	13520480	13520481	1
Deletion	Chr8	20696084	20696091	7
Deletion	Chr9	21060780	21060784	4
Deletion	Chr2	21126653	21126654	1
Deletion	Chr1	23159266	23159269	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes