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Mutant Information

Mutant Name	FN1633-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1633-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (40% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5160874 A-G Hetero INTERGENIC
SBS Chr1 6852382 C-T Homo INTERGENIC
SBS Chr1 16586358 A-G Hetero INTERGENIC
SBS Chr1 17530900 A-T Hetero INTERGENIC
SBS Chr1 18204703 T-G Hetero INTERGENIC
SBS Chr1 23000006 G-A Hetero INTERGENIC
SBS Chr2 15494381 G-A Hetero INTERGENIC
SBS Chr2 24808908 T-A Hetero INTERGENIC
SBS Chr2 30441171 C-A Hetero INTERGENIC
SBS Chr3 5849420 G-A Hetero INTRON
SBS Chr3 8949943 A-T Homo INTRON
SBS Chr3 20073794 C-T Hetero INTRON
SBS Chr3 20777804 C-A Hetero INTERGENIC
SBS Chr3 21230842 T-A Hetero INTERGENIC
SBS Chr3 23552550 T-A Hetero INTERGENIC
SBS Chr4 24356153 C-A Homo INTERGENIC
SBS Chr4 30043668 G-A Hetero INTERGENIC
SBS Chr5 27009450 G-A Hetero INTERGENIC
SBS Chr6 16933944 G-A Hetero INTERGENIC
SBS Chr6 17633478 C-A Hetero INTERGENIC
SBS Chr6 17633479 T-A Hetero INTERGENIC
SBS Chr6 17633480 G-A Hetero INTERGENIC
SBS Chr6 17974293 A-G Hetero INTRON
SBS Chr6 23235155 C-T Hetero INTERGENIC
SBS Chr6 26524243 C-T Hetero INTERGENIC
SBS Chr7 10375461 G-A Hetero INTERGENIC
SBS Chr7 14265699 C-A Hetero INTERGENIC
SBS Chr7 15585811 G-T Hetero INTRON
SBS Chr7 17494440 T-A Hetero INTERGENIC
SBS Chr7 20287368 A-T Hetero INTERGENIC
SBS Chr7 22794079 T-A Hetero UTR_5_PRIME
SBS Chr8 6128406 G-C Homo INTERGENIC
SBS Chr8 12905672 A-G Hetero INTERGENIC
SBS Chr8 26028282 C-T Hetero INTERGENIC
SBS Chr9 1892694 C-T Hetero INTERGENIC
SBS Chr9 2858275 A-C Hetero INTERGENIC
SBS Chr9 3360532 A-G Hetero INTERGENIC
SBS Chr9 8381837 A-T Hetero INTERGENIC
SBS Chr9 8381838 G-T Hetero INTERGENIC
SBS Chr9 8822467 A-T Hetero SPLICE_SITE_REGION
SBS Chr9 13914535 G-C Homo INTERGENIC
SBS Chr9 19484797 C-G Hetero INTERGENIC
SBS Chr10 12637447 G-A Hetero INTERGENIC
SBS Chr10 12637449 G-T Hetero INTERGENIC
SBS Chr11 918715 C-T Hetero INTERGENIC
SBS Chr11 6057739 C-T Hetero INTERGENIC
SBS Chr11 13145961 A-C Hetero INTERGENIC
SBS Chr11 17488223 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g136900
SBS Chr11 26497178 C-T Hetero INTERGENIC
SBS Chr12 1492416 G-T Hetero INTERGENIC
SBS Chr12 6083351 C-T Hetero INTERGENIC
SBS Chr12 11190774 C-G Hetero INTERGENIC
SBS Chr12 23851750 C-A Hetero INTERGENIC
SBS Chr12 26723874 A-G Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 45601 45605 4
Deletion Chr9 2860731 2860746 15
Deletion Chr2 4244427 4244428 1
Deletion Chr2 4312495 4312503 8
Deletion Chr8 4417249 4417268 19
Deletion Chr8 6178907 6178917 10
Deletion Chr7 6254322 6254327 5
Deletion Chr11 6663795 6663907 112
Deletion Chr6 8913141 8913149 8
Deletion Chr7 9662470 9662475 5
Deletion Chr1 12959320 12959321 1
Deletion Chr10 13028842 13028843 1
Deletion Chr9 13403385 13403387 2
Deletion Chr10 13793443 13793444 1
Deletion Chr7 15671721 15671731 10
Deletion Chr9 17184976 17184978 2 OsKitaake09g128400
Deletion Chr7 17255017 17255018 1
Deletion Chr6 19820991 19821000 9
Deletion Chr10 20196797 20196803 6
Deletion Chr11 20836465 20836466 1
Deletion Chr10 21368394 21368416 22
Deletion Chr3 21801728 21801729 1
Deletion Chr8 22820193 22820204 11
Deletion Chr12 26061199 26061201 2
Deletion Chr2 27932967 27932976 9
Deletion Chr3 29336868 29336877 9 OsKitaake03g305900

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21765199 21765202 2
Insertion Chr7 269789 269792 2
Insertion Chr8 28304244 28304247 2
Insertion Chr11 6137072 6137075 2
Insertion Chr6 2211286 2211291 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 5993491 6108312 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 4732948 Chr7 22793801 2
Translocation Chr8 4733446 Chr7 22793795 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5160874	A-G	Hetero	INTERGENIC
SBS	Chr1	6852382	C-T	Homo	INTERGENIC
SBS	Chr1	16586358	A-G	Hetero	INTERGENIC
SBS	Chr1	17530900	A-T	Hetero	INTERGENIC
SBS	Chr1	18204703	T-G	Hetero	INTERGENIC
SBS	Chr1	23000006	G-A	Hetero	INTERGENIC
SBS	Chr2	15494381	G-A	Hetero	INTERGENIC
SBS	Chr2	24808908	T-A	Hetero	INTERGENIC
SBS	Chr2	30441171	C-A	Hetero	INTERGENIC
SBS	Chr3	5849420	G-A	Hetero	INTRON
SBS	Chr3	8949943	A-T	Homo	INTRON
SBS	Chr3	20073794	C-T	Hetero	INTRON
SBS	Chr3	20777804	C-A	Hetero	INTERGENIC
SBS	Chr3	21230842	T-A	Hetero	INTERGENIC
SBS	Chr3	23552550	T-A	Hetero	INTERGENIC
SBS	Chr4	24356153	C-A	Homo	INTERGENIC
SBS	Chr4	30043668	G-A	Hetero	INTERGENIC
SBS	Chr5	27009450	G-A	Hetero	INTERGENIC
SBS	Chr6	16933944	G-A	Hetero	INTERGENIC
SBS	Chr6	17633478	C-A	Hetero	INTERGENIC
SBS	Chr6	17633479	T-A	Hetero	INTERGENIC
SBS	Chr6	17633480	G-A	Hetero	INTERGENIC
SBS	Chr6	17974293	A-G	Hetero	INTRON
SBS	Chr6	23235155	C-T	Hetero	INTERGENIC
SBS	Chr6	26524243	C-T	Hetero	INTERGENIC
SBS	Chr7	10375461	G-A	Hetero	INTERGENIC
SBS	Chr7	14265699	C-A	Hetero	INTERGENIC
SBS	Chr7	15585811	G-T	Hetero	INTRON
SBS	Chr7	17494440	T-A	Hetero	INTERGENIC
SBS	Chr7	20287368	A-T	Hetero	INTERGENIC
SBS	Chr7	22794079	T-A	Hetero	UTR_5_PRIME
SBS	Chr8	6128406	G-C	Homo	INTERGENIC
SBS	Chr8	12905672	A-G	Hetero	INTERGENIC
SBS	Chr8	26028282	C-T	Hetero	INTERGENIC
SBS	Chr9	1892694	C-T	Hetero	INTERGENIC
SBS	Chr9	2858275	A-C	Hetero	INTERGENIC
SBS	Chr9	3360532	A-G	Hetero	INTERGENIC
SBS	Chr9	8381837	A-T	Hetero	INTERGENIC
SBS	Chr9	8381838	G-T	Hetero	INTERGENIC
SBS	Chr9	8822467	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr9	13914535	G-C	Homo	INTERGENIC
SBS	Chr9	19484797	C-G	Hetero	INTERGENIC
SBS	Chr10	12637447	G-A	Hetero	INTERGENIC
SBS	Chr10	12637449	G-T	Hetero	INTERGENIC
SBS	Chr11	918715	C-T	Hetero	INTERGENIC
SBS	Chr11	6057739	C-T	Hetero	INTERGENIC
SBS	Chr11	13145961	A-C	Hetero	INTERGENIC
SBS	Chr11	17488223	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g136900
SBS	Chr11	26497178	C-T	Hetero	INTERGENIC
SBS	Chr12	1492416	G-T	Hetero	INTERGENIC
SBS	Chr12	6083351	C-T	Hetero	INTERGENIC
SBS	Chr12	11190774	C-G	Hetero	INTERGENIC
SBS	Chr12	23851750	C-A	Hetero	INTERGENIC
SBS	Chr12	26723874	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	45601	45605	4
Deletion	Chr9	2860731	2860746	15
Deletion	Chr2	4244427	4244428	1
Deletion	Chr2	4312495	4312503	8
Deletion	Chr8	4417249	4417268	19
Deletion	Chr8	6178907	6178917	10
Deletion	Chr7	6254322	6254327	5
Deletion	Chr11	6663795	6663907	112
Deletion	Chr6	8913141	8913149	8
Deletion	Chr7	9662470	9662475	5
Deletion	Chr1	12959320	12959321	1
Deletion	Chr10	13028842	13028843	1
Deletion	Chr9	13403385	13403387	2
Deletion	Chr10	13793443	13793444	1
Deletion	Chr7	15671721	15671731	10
Deletion	Chr9	17184976	17184978	2	OsKitaake09g128400
Deletion	Chr7	17255017	17255018	1
Deletion	Chr6	19820991	19821000	9
Deletion	Chr10	20196797	20196803	6
Deletion	Chr11	20836465	20836466	1
Deletion	Chr10	21368394	21368416	22
Deletion	Chr3	21801728	21801729	1
Deletion	Chr8	22820193	22820204	11
Deletion	Chr12	26061199	26061201	2
Deletion	Chr2	27932967	27932976	9
Deletion	Chr3	29336868	29336877	9	OsKitaake03g305900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5993491	6108312	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes