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Mutant Information

Mutant Name	FN1634-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1634-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13089153 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g155200
SBS Chr1 13089154 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g155200
SBS Chr1 33609612 G-A Hetero INTRON
SBS Chr1 35733028 A-T Hetero INTERGENIC
SBS Chr1 37760187 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g403100
SBS Chr2 4326520 A-T Hetero INTERGENIC
SBS Chr2 17938140 C-T Hetero INTERGENIC
SBS Chr2 28425314 A-G Hetero INTERGENIC
SBS Chr2 29946141 T-A Hetero INTERGENIC
SBS Chr2 35019417 T-A Hetero INTRON
SBS Chr3 1934315 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g027700
SBS Chr3 15081998 A-T Hetero UTR_5_PRIME
SBS Chr3 17627659 G-C Hetero INTERGENIC
SBS Chr3 18164826 G-A Hetero INTERGENIC
SBS Chr3 22030851 T-G Hetero UTR_3_PRIME
SBS Chr4 1836922 T-A Hetero INTRON
SBS Chr4 6090950 G-A Hetero INTERGENIC
SBS Chr4 6639107 G-A Hetero INTERGENIC
SBS Chr4 7086565 G-A Hetero INTERGENIC
SBS Chr5 7539432 G-T Hetero INTERGENIC
SBS Chr5 9325256 G-A Hetero INTERGENIC
SBS Chr5 12018660 G-A Homo INTERGENIC
SBS Chr5 19027109 T-A Homo INTERGENIC
SBS Chr5 19524167 G-C Homo INTRON
SBS Chr5 23662043 C-T Homo INTERGENIC
SBS Chr5 26892930 C-A Hetero SYNONYMOUS_CODING
SBS Chr6 2860748 G-A Hetero SPLICE_SITE_REGION
SBS Chr6 10713367 G-A Hetero INTERGENIC
SBS Chr6 13580842 G-A Hetero INTERGENIC
SBS Chr6 22220405 G-T Hetero INTERGENIC
SBS Chr6 22630938 G-A Hetero INTERGENIC
SBS Chr6 28152505 T-C Hetero INTERGENIC
SBS Chr6 29450323 C-T Homo INTERGENIC
SBS Chr7 4706252 G-T Hetero INTERGENIC
SBS Chr7 13838161 T-C Homo INTERGENIC
SBS Chr7 25116614 G-A Homo INTERGENIC
SBS Chr8 11052909 T-G Hetero INTERGENIC
SBS Chr8 12531069 C-T Hetero INTERGENIC
SBS Chr8 23702848 C-A Hetero INTERGENIC
SBS Chr8 26554356 T-A Hetero INTRON
SBS Chr9 2769987 T-C Hetero INTERGENIC
SBS Chr9 8055926 G-A Hetero INTERGENIC
SBS Chr10 16023726 A-T Hetero UTR_3_PRIME
SBS Chr10 16609754 G-A Hetero INTERGENIC
SBS Chr10 16609755 G-A Hetero INTERGENIC
SBS Chr11 568976 A-G Hetero INTERGENIC
SBS Chr11 6321605 T-A Homo INTERGENIC
SBS Chr11 6321607 G-T Homo INTERGENIC
SBS Chr11 16927136 C-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3632001 3640000 7999 OsKitaake03g051400
Deletion Chr9 3921691 3921693 2
Deletion Chr9 4661338 4661339 1
Deletion Chr4 5484599 5484605 6
Deletion Chr9 5877854 5877855 1
Deletion Chr10 8057001 8136000 78999 6
Deletion Chr4 9190045 9190046 1
Deletion Chr6 10636524 10636624 100 OsKitaake06g119501
Deletion Chr1 11184901 11184909 8
Deletion Chr2 12386462 12386463 1
Deletion Chr12 12898742 12898758 16
Deletion Chr4 14599603 14599605 2
Deletion Chr11 15107821 15107822 1
Deletion Chr4 15641687 15641688 1
Deletion Chr11 16562233 16562235 2
Deletion Chr10 17183807 17183819 12
Deletion Chr6 17750305 17750311 6
Deletion Chr1 20059830 20059839 9
Deletion Chr3 23427951 23427953 2
Deletion Chr3 25140907 25140908 1 OsKitaake03g266250
Deletion Chr3 27608565 27608567 2
Deletion Chr3 29612318 29612348 30
Deletion Chr4 36601225 36601236 11
Deletion Chr1 43973433 43973436 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 29645281 29645283 1 OsKitaake05g283000
Insertion Chr9 2802017 2802020 2
Insertion Chr10 7996168 7996171 2
Insertion Chr6 11349 11351 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 14963739 15270539 OsKitaake10g093400
Inversion Chr10 14963779 15270549 OsKitaake10g093400
Inversion Chr11 17650272 18099708
Inversion Chr11 17650274 18099709
Inversion Chr4 23251676 24227369 2
Inversion Chr4 23251696 23488323 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5243657 Chr7 14582406
Translocation Chr8 5252290 Chr1 11062157
Translocation Chr8 5252291 Chr7 14582420
Translocation Chr7 14582420 Chr1 11061846

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13089153	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g155200
SBS	Chr1	13089154	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g155200
SBS	Chr1	33609612	G-A	Hetero	INTRON
SBS	Chr1	35733028	A-T	Hetero	INTERGENIC
SBS	Chr1	37760187	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g403100
SBS	Chr2	4326520	A-T	Hetero	INTERGENIC
SBS	Chr2	17938140	C-T	Hetero	INTERGENIC
SBS	Chr2	28425314	A-G	Hetero	INTERGENIC
SBS	Chr2	29946141	T-A	Hetero	INTERGENIC
SBS	Chr2	35019417	T-A	Hetero	INTRON
SBS	Chr3	1934315	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g027700
SBS	Chr3	15081998	A-T	Hetero	UTR_5_PRIME
SBS	Chr3	17627659	G-C	Hetero	INTERGENIC
SBS	Chr3	18164826	G-A	Hetero	INTERGENIC
SBS	Chr3	22030851	T-G	Hetero	UTR_3_PRIME
SBS	Chr4	1836922	T-A	Hetero	INTRON
SBS	Chr4	6090950	G-A	Hetero	INTERGENIC
SBS	Chr4	6639107	G-A	Hetero	INTERGENIC
SBS	Chr4	7086565	G-A	Hetero	INTERGENIC
SBS	Chr5	7539432	G-T	Hetero	INTERGENIC
SBS	Chr5	9325256	G-A	Hetero	INTERGENIC
SBS	Chr5	12018660	G-A	Homo	INTERGENIC
SBS	Chr5	19027109	T-A	Homo	INTERGENIC
SBS	Chr5	19524167	G-C	Homo	INTRON
SBS	Chr5	23662043	C-T	Homo	INTERGENIC
SBS	Chr5	26892930	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	2860748	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr6	10713367	G-A	Hetero	INTERGENIC
SBS	Chr6	13580842	G-A	Hetero	INTERGENIC
SBS	Chr6	22220405	G-T	Hetero	INTERGENIC
SBS	Chr6	22630938	G-A	Hetero	INTERGENIC
SBS	Chr6	28152505	T-C	Hetero	INTERGENIC
SBS	Chr6	29450323	C-T	Homo	INTERGENIC
SBS	Chr7	4706252	G-T	Hetero	INTERGENIC
SBS	Chr7	13838161	T-C	Homo	INTERGENIC
SBS	Chr7	25116614	G-A	Homo	INTERGENIC
SBS	Chr8	11052909	T-G	Hetero	INTERGENIC
SBS	Chr8	12531069	C-T	Hetero	INTERGENIC
SBS	Chr8	23702848	C-A	Hetero	INTERGENIC
SBS	Chr8	26554356	T-A	Hetero	INTRON
SBS	Chr9	2769987	T-C	Hetero	INTERGENIC
SBS	Chr9	8055926	G-A	Hetero	INTERGENIC
SBS	Chr10	16023726	A-T	Hetero	UTR_3_PRIME
SBS	Chr10	16609754	G-A	Hetero	INTERGENIC
SBS	Chr10	16609755	G-A	Hetero	INTERGENIC
SBS	Chr11	568976	A-G	Hetero	INTERGENIC
SBS	Chr11	6321605	T-A	Homo	INTERGENIC
SBS	Chr11	6321607	G-T	Homo	INTERGENIC
SBS	Chr11	16927136	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3632001	3640000	7999	OsKitaake03g051400
Deletion	Chr9	3921691	3921693	2
Deletion	Chr9	4661338	4661339	1
Deletion	Chr4	5484599	5484605	6
Deletion	Chr9	5877854	5877855	1
Deletion	Chr10	8057001	8136000	78999	6
Deletion	Chr4	9190045	9190046	1
Deletion	Chr6	10636524	10636624	100	OsKitaake06g119501
Deletion	Chr1	11184901	11184909	8
Deletion	Chr2	12386462	12386463	1
Deletion	Chr12	12898742	12898758	16
Deletion	Chr4	14599603	14599605	2
Deletion	Chr11	15107821	15107822	1
Deletion	Chr4	15641687	15641688	1
Deletion	Chr11	16562233	16562235	2
Deletion	Chr10	17183807	17183819	12
Deletion	Chr6	17750305	17750311	6
Deletion	Chr1	20059830	20059839	9
Deletion	Chr3	23427951	23427953	2
Deletion	Chr3	25140907	25140908	1	OsKitaake03g266250
Deletion	Chr3	27608565	27608567	2
Deletion	Chr3	29612318	29612348	30
Deletion	Chr4	36601225	36601236	11
Deletion	Chr1	43973433	43973436	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14963739	15270539	OsKitaake10g093400
Inversion	Chr10	14963779	15270549	OsKitaake10g093400
Inversion	Chr11	17650272	18099708
Inversion	Chr11	17650274	18099709
Inversion	Chr4	23251676	24227369	2
Inversion	Chr4	23251696	23488323	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes