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Mutant Information

Mutant Name	FN1635-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1635-S Alignment File
Seed Availability	No
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23584046	C-T	Hetero	INTERGENIC
SBS	Chr1	31463407	A-G	Hetero	INTERGENIC
SBS	Chr2	17126426	A-T	Hetero	INTERGENIC
SBS	Chr2	17126448	G-A	Hetero	INTERGENIC
SBS	Chr2	25215581	G-C	Hetero	UTR_5_PRIME
SBS	Chr2	25670721	A-G	Hetero	INTERGENIC
SBS	Chr2	35933022	A-C	Hetero	INTERGENIC
SBS	Chr3	1051487	G-T	Hetero	SPLICE_SITE_REGION
SBS	Chr3	16253009	C-A	Hetero	INTERGENIC
SBS	Chr4	16693106	C-A	Homo	INTERGENIC
SBS	Chr5	13925867	T-G	Hetero	INTERGENIC
SBS	Chr6	11103527	C-T	Hetero	INTERGENIC
SBS	Chr6	16841927	C-T	Hetero	INTRON
SBS	Chr6	20516444	C-T	Hetero	INTERGENIC
SBS	Chr7	1579916	A-C	Hetero	INTRON
SBS	Chr7	9583508	A-T	Hetero	INTERGENIC
SBS	Chr7	20004641	G-A	Hetero	INTERGENIC
SBS	Chr7	27782710	C-A	Hetero	INTERGENIC
SBS	Chr10	3864667	T-A	Hetero	INTERGENIC
SBS	Chr10	13737757	C-T	Hetero	INTERGENIC
SBS	Chr10	13737759	G-T	Hetero	INTERGENIC
SBS	Chr11	2355919	T-C	Hetero	INTERGENIC
SBS	Chr11	23264544	G-T	Hetero	INTERGENIC
SBS	Chr11	23519848	T-A	Hetero	INTERGENIC
SBS	Chr11	24400937	A-C	Hetero	INTERGENIC

Deletions: 8

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	4754001	4774000	19999	OsKitaake05g053750
Deletion	Chr2	4845001	4879000	33999	6
Deletion	Chr2	6466016	6466026	10
Deletion	Chr11	7475786	7475787	1	OsKitaake11g084366
Deletion	Chr7	11984659	11984660	1
Deletion	Chr5	19703001	19732000	28999	2
Deletion	Chr11	28993001	29007000	13999	OsKitaake11g237500
Deletion	Chr3	37711825	37711826	1	OsKitaake03g423700

Insertions: 3

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr5	15427052	15427054	1	OsKitaake05g118300
Insertion	Chr7	22848895	22848898	2
Insertion	Chr12	11659468	11659470	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4879922	5279183	OsKitaake02g067301
Inversion	Chr8	26494969	26610000

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	22166	Chr9	6408169	OsKitaake12g000100
Translocation	Chr12	22174	Chr9	6397926	OsKitaake12g000100
Translocation	Chr12	14782504	Chr11	9093429
Translocation	Chr8	26484117	Chr2	490140
Translocation	Chr8	26561630	Chr6	18254254	2
Translocation	Chr8	26562007	Chr6	20800698	2