Search Kitaake

Mutant Information

Mutant Name	FN1638-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1638-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 897420 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g010300
SBS Chr1 27964688 C-T Hetero UTR_3_PRIME
SBS Chr1 41424731 C-T Hetero INTERGENIC
SBS Chr2 24860015 A-G Hetero INTERGENIC
SBS Chr3 2957651 G-A Homo INTERGENIC
SBS Chr3 26174524 C-T Hetero INTERGENIC
SBS Chr3 36692191 A-C Hetero INTRON
SBS Chr4 2202591 C-T Hetero INTERGENIC
SBS Chr4 28616531 G-A Hetero INTERGENIC
SBS Chr4 29205473 A-T Hetero INTRON
SBS Chr4 30186743 T-C Hetero INTERGENIC
SBS Chr5 7617193 A-G Hetero INTERGENIC
SBS Chr5 15962309 G-T Hetero INTERGENIC
SBS Chr5 17261854 A-T Homo INTERGENIC
SBS Chr5 28626278 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g268200
SBS Chr6 16768555 G-T Homo INTERGENIC
SBS Chr6 16768556 C-T Homo INTERGENIC
SBS Chr7 5391340 G-A Homo INTRON
SBS Chr7 10709536 C-G Hetero INTERGENIC
SBS Chr7 11837728 T-A Hetero INTERGENIC
SBS Chr7 13601461 G-A Hetero INTERGENIC
SBS Chr7 17494419 G-A Hetero INTERGENIC
SBS Chr8 10460 T-C Hetero INTERGENIC
SBS Chr8 13778386 C-T Hetero INTERGENIC
SBS Chr8 14932809 A-C Hetero INTERGENIC
SBS Chr8 14932810 T-A Hetero INTERGENIC
SBS Chr8 16485100 A-G Hetero INTERGENIC
SBS Chr9 1257498 T-C Hetero INTERGENIC
SBS Chr9 16773955 T-C Homo INTERGENIC
SBS Chr10 14033226 C-A Hetero INTRON
SBS Chr11 297722 G-A Homo INTRON
SBS Chr11 21078443 G-A Homo INTERGENIC
SBS Chr12 12047889 T-G Hetero INTERGENIC
SBS Chr12 16915712 C-T Hetero INTERGENIC
SBS Chr12 18931465 A-G Hetero INTERGENIC
SBS Chr12 24076800 G-A Homo SYNONYMOUS_CODING
SBS Chr12 24275756 G-T Homo INTERGENIC
SBS Chr12 26980896 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2548524 2548526 2
Deletion Chr4 3931603 3931604 1
Deletion Chr5 7924401 7924404 3
Deletion Chr7 8151001 8348000 196999 15
Deletion Chr7 8659001 8755000 95999 7
Deletion Chr7 8763001 8918000 154999 12
Deletion Chr12 11335001 11414000 78999 OsKitaake12g102301
Deletion Chr2 20012916 20012930 14
Deletion Chr2 22815768 22815772 4
Deletion Chr11 23418250 23418255 5
Deletion Chr6 24444380 24444381 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 1309103 1309106 2
Insertion Chr9 14509920 14509923 2
Insertion Chr11 6478701 6478704 2 OsKitaake11g077000
Insertion Chr11 6789229 6789232 2
Insertion Chr12 809653 809656 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 4693707 4693845 OsKitaake07g058100
Inversion Chr6 6057203 6057357
Inversion Chr5 7478317 7926443
Inversion Chr3 27731365 27905471
Inversion Chr3 27731434 27905480
Inversion Chr3 28150314 28153200 OsKitaake03g291300

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 8912679 Chr3 27731434

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	897420	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g010300
SBS	Chr1	27964688	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	41424731	C-T	Hetero	INTERGENIC
SBS	Chr2	24860015	A-G	Hetero	INTERGENIC
SBS	Chr3	2957651	G-A	Homo	INTERGENIC
SBS	Chr3	26174524	C-T	Hetero	INTERGENIC
SBS	Chr3	36692191	A-C	Hetero	INTRON
SBS	Chr4	2202591	C-T	Hetero	INTERGENIC
SBS	Chr4	28616531	G-A	Hetero	INTERGENIC
SBS	Chr4	29205473	A-T	Hetero	INTRON
SBS	Chr4	30186743	T-C	Hetero	INTERGENIC
SBS	Chr5	7617193	A-G	Hetero	INTERGENIC
SBS	Chr5	15962309	G-T	Hetero	INTERGENIC
SBS	Chr5	17261854	A-T	Homo	INTERGENIC
SBS	Chr5	28626278	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g268200
SBS	Chr6	16768555	G-T	Homo	INTERGENIC
SBS	Chr6	16768556	C-T	Homo	INTERGENIC
SBS	Chr7	5391340	G-A	Homo	INTRON
SBS	Chr7	10709536	C-G	Hetero	INTERGENIC
SBS	Chr7	11837728	T-A	Hetero	INTERGENIC
SBS	Chr7	13601461	G-A	Hetero	INTERGENIC
SBS	Chr7	17494419	G-A	Hetero	INTERGENIC
SBS	Chr8	10460	T-C	Hetero	INTERGENIC
SBS	Chr8	13778386	C-T	Hetero	INTERGENIC
SBS	Chr8	14932809	A-C	Hetero	INTERGENIC
SBS	Chr8	14932810	T-A	Hetero	INTERGENIC
SBS	Chr8	16485100	A-G	Hetero	INTERGENIC
SBS	Chr9	1257498	T-C	Hetero	INTERGENIC
SBS	Chr9	16773955	T-C	Homo	INTERGENIC
SBS	Chr10	14033226	C-A	Hetero	INTRON
SBS	Chr11	297722	G-A	Homo	INTRON
SBS	Chr11	21078443	G-A	Homo	INTERGENIC
SBS	Chr12	12047889	T-G	Hetero	INTERGENIC
SBS	Chr12	16915712	C-T	Hetero	INTERGENIC
SBS	Chr12	18931465	A-G	Hetero	INTERGENIC
SBS	Chr12	24076800	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr12	24275756	G-T	Homo	INTERGENIC
SBS	Chr12	26980896	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2548524	2548526	2
Deletion	Chr4	3931603	3931604	1
Deletion	Chr5	7924401	7924404	3
Deletion	Chr7	8151001	8348000	196999	15
Deletion	Chr7	8659001	8755000	95999	7
Deletion	Chr7	8763001	8918000	154999	12
Deletion	Chr12	11335001	11414000	78999	OsKitaake12g102301
Deletion	Chr2	20012916	20012930	14
Deletion	Chr2	22815768	22815772	4
Deletion	Chr11	23418250	23418255	5
Deletion	Chr6	24444380	24444381	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4693707	4693845	OsKitaake07g058100
Inversion	Chr6	6057203	6057357
Inversion	Chr5	7478317	7926443
Inversion	Chr3	27731365	27905471
Inversion	Chr3	27731434	27905480
Inversion	Chr3	28150314	28153200	OsKitaake03g291300

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes