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Mutant Information

Mutant Name	FN1641-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1641-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17027457 G-A Hetero INTERGENIC
SBS Chr1 35258713 G-A Homo INTERGENIC
SBS Chr1 35269719 C-T Homo INTERGENIC
SBS Chr2 7559513 T-C Hetero INTERGENIC
SBS Chr2 10101834 G-C Hetero INTERGENIC
SBS Chr2 10101997 T-A Hetero INTERGENIC
SBS Chr2 20334377 A-T Hetero INTERGENIC
SBS Chr2 24736364 G-C Hetero INTERGENIC
SBS Chr3 4903456 T-A Homo INTERGENIC
SBS Chr3 26755675 T-G Homo INTERGENIC
SBS Chr4 21595194 C-T Homo INTERGENIC
SBS Chr4 22740503 C-T Homo UTR_5_PRIME
SBS Chr6 15438473 G-T Homo INTERGENIC
SBS Chr7 16359170 A-T Hetero INTERGENIC
SBS Chr7 28571799 T-C Hetero INTRON
SBS Chr8 22869979 A-G Hetero INTERGENIC
SBS Chr8 24504348 G-A Hetero INTERGENIC
SBS Chr9 14998944 G-A Homo INTERGENIC
SBS Chr9 22232337 G-A Hetero INTERGENIC
SBS Chr10 4860703 C-T Homo INTERGENIC
SBS Chr11 15878245 G-A Homo INTERGENIC
SBS Chr12 13317871 T-G Hetero INTERGENIC
SBS Chr12 26337785 A-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1929565 1929573 8
Deletion Chr10 2748295 2748298 3
Deletion Chr3 4577236 4577238 2
Deletion Chr8 6366210 6366211 1
Deletion Chr2 9778001 9924000 145999 6
Deletion Chr9 14316857 14316858 1
Deletion Chr6 15609376 15609377 1
Deletion Chr10 15904724 15904725 1
Deletion Chr4 29686055 29686066 11
Deletion Chr2 33039007 33039028 21
Deletion Chr1 35533721 35533722 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 2917658 2917660 1
Insertion Chr9 2754472 2754474 1

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 462904 463318 OsKitaake01g006500
Inversion Chr5 2452210 2452583 OsKitaake05g027900
Inversion Chr6 10323382 10685310
Inversion Chr6 10323392 10685307
Inversion Chr5 16204747 16205156 OsKitaake05g124000
Inversion Chr2 19174667 19174913 OsKitaake02g187500
Inversion Chr2 24456753 24456969
Inversion Chr5 27418355 27418784

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17027457	G-A	Hetero	INTERGENIC
SBS	Chr1	35258713	G-A	Homo	INTERGENIC
SBS	Chr1	35269719	C-T	Homo	INTERGENIC
SBS	Chr2	7559513	T-C	Hetero	INTERGENIC
SBS	Chr2	10101834	G-C	Hetero	INTERGENIC
SBS	Chr2	10101997	T-A	Hetero	INTERGENIC
SBS	Chr2	20334377	A-T	Hetero	INTERGENIC
SBS	Chr2	24736364	G-C	Hetero	INTERGENIC
SBS	Chr3	4903456	T-A	Homo	INTERGENIC
SBS	Chr3	26755675	T-G	Homo	INTERGENIC
SBS	Chr4	21595194	C-T	Homo	INTERGENIC
SBS	Chr4	22740503	C-T	Homo	UTR_5_PRIME
SBS	Chr6	15438473	G-T	Homo	INTERGENIC
SBS	Chr7	16359170	A-T	Hetero	INTERGENIC
SBS	Chr7	28571799	T-C	Hetero	INTRON
SBS	Chr8	22869979	A-G	Hetero	INTERGENIC
SBS	Chr8	24504348	G-A	Hetero	INTERGENIC
SBS	Chr9	14998944	G-A	Homo	INTERGENIC
SBS	Chr9	22232337	G-A	Hetero	INTERGENIC
SBS	Chr10	4860703	C-T	Homo	INTERGENIC
SBS	Chr11	15878245	G-A	Homo	INTERGENIC
SBS	Chr12	13317871	T-G	Hetero	INTERGENIC
SBS	Chr12	26337785	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1929565	1929573	8
Deletion	Chr10	2748295	2748298	3
Deletion	Chr3	4577236	4577238	2
Deletion	Chr8	6366210	6366211	1
Deletion	Chr2	9778001	9924000	145999	6
Deletion	Chr9	14316857	14316858	1
Deletion	Chr6	15609376	15609377	1
Deletion	Chr10	15904724	15904725	1
Deletion	Chr4	29686055	29686066	11
Deletion	Chr2	33039007	33039028	21
Deletion	Chr1	35533721	35533722	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	462904	463318	OsKitaake01g006500
Inversion	Chr5	2452210	2452583	OsKitaake05g027900
Inversion	Chr6	10323382	10685310
Inversion	Chr6	10323392	10685307
Inversion	Chr5	16204747	16205156	OsKitaake05g124000
Inversion	Chr2	19174667	19174913	OsKitaake02g187500
Inversion	Chr2	24456753	24456969
Inversion	Chr5	27418355	27418784

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes