Search Kitaake

Mutant Information

Mutant Name	FN1643-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1643-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12828916 C-G Homo INTERGENIC
SBS Chr2 211904 A-T Homo INTRON
SBS Chr2 28874776 T-C Hetero UTR_3_PRIME
SBS Chr2 33994056 C-T Homo INTERGENIC
SBS Chr3 9875433 T-C Hetero INTRON
SBS Chr3 11662443 T-A Hetero INTERGENIC
SBS Chr3 18097752 T-A Homo INTERGENIC
SBS Chr3 20429177 C-T Hetero INTERGENIC
SBS Chr4 4498010 C-A Hetero INTERGENIC
SBS Chr4 10610606 T-A Hetero INTERGENIC
SBS Chr4 21017580 A-T Hetero INTERGENIC
SBS Chr4 22876486 G-A Hetero INTERGENIC
SBS Chr6 1177885 C-T Hetero INTERGENIC
SBS Chr6 1177887 C-T Hetero INTERGENIC
SBS Chr6 14996931 G-A Homo INTERGENIC
SBS Chr6 16565062 A-T Homo INTERGENIC
SBS Chr6 23919545 T-C Homo INTERGENIC
SBS Chr7 3523811 A-T Hetero INTRON
SBS Chr7 12156016 G-A Hetero INTERGENIC
SBS Chr7 15630503 C-T Hetero INTERGENIC
SBS Chr7 24841916 A-T Hetero INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 9269998 C-A Homo INTERGENIC
SBS Chr9 14459657 G-A Homo INTERGENIC
SBS Chr10 14187241 T-C Homo INTRON
SBS Chr10 16140299 T-C Homo INTERGENIC
SBS Chr11 11796137 G-A Homo INTERGENIC
SBS Chr11 24337151 C-A Homo INTERGENIC
SBS Chr12 8787576 G-T Hetero INTERGENIC
SBS Chr12 14151801 G-C Hetero INTERGENIC
SBS Chr12 14151802 G-T Hetero INTERGENIC
SBS Chr12 17388807 C-T Hetero INTERGENIC
SBS Chr12 17422440 G-A Hetero UTR_5_PRIME

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 11283 11284 1
Deletion Chr2 441158 441173 15 OsKitaake02g006200
Deletion Chr8 935433 935435 2
Deletion Chr3 6280035 6280155 120
Deletion Chr5 6328284 6328287 3
Deletion Chr7 8965001 9789000 823999 34
Deletion Chr7 9555241 9555246 5
Deletion Chr8 14250206 14250213 7
Deletion Chr1 15914864 15914883 19
Deletion Chr12 18249098 18249099 1
Deletion Chr11 19557001 19557017 16
Deletion Chr11 20565652 20565653 1
Deletion Chr12 26637595 26637602 7
Deletion Chr2 28517450 28517453 3
Deletion Chr2 36267594 36267602 8
Deletion Chr4 36463062 36463065 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20811901 20811904 2
Insertion Chr7 19375234 19375237 2
Insertion Chr9 10160983 10160987 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 11799323 Chr8 29175821 2
Translocation Chr9 11800406 Chr8 29175820 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12828916	C-G	Homo	INTERGENIC
SBS	Chr2	211904	A-T	Homo	INTRON
SBS	Chr2	28874776	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	33994056	C-T	Homo	INTERGENIC
SBS	Chr3	9875433	T-C	Hetero	INTRON
SBS	Chr3	11662443	T-A	Hetero	INTERGENIC
SBS	Chr3	18097752	T-A	Homo	INTERGENIC
SBS	Chr3	20429177	C-T	Hetero	INTERGENIC
SBS	Chr4	4498010	C-A	Hetero	INTERGENIC
SBS	Chr4	10610606	T-A	Hetero	INTERGENIC
SBS	Chr4	21017580	A-T	Hetero	INTERGENIC
SBS	Chr4	22876486	G-A	Hetero	INTERGENIC
SBS	Chr6	1177885	C-T	Hetero	INTERGENIC
SBS	Chr6	1177887	C-T	Hetero	INTERGENIC
SBS	Chr6	14996931	G-A	Homo	INTERGENIC
SBS	Chr6	16565062	A-T	Homo	INTERGENIC
SBS	Chr6	23919545	T-C	Homo	INTERGENIC
SBS	Chr7	3523811	A-T	Hetero	INTRON
SBS	Chr7	12156016	G-A	Hetero	INTERGENIC
SBS	Chr7	15630503	C-T	Hetero	INTERGENIC
SBS	Chr7	24841916	A-T	Hetero	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	9269998	C-A	Homo	INTERGENIC
SBS	Chr9	14459657	G-A	Homo	INTERGENIC
SBS	Chr10	14187241	T-C	Homo	INTRON
SBS	Chr10	16140299	T-C	Homo	INTERGENIC
SBS	Chr11	11796137	G-A	Homo	INTERGENIC
SBS	Chr11	24337151	C-A	Homo	INTERGENIC
SBS	Chr12	8787576	G-T	Hetero	INTERGENIC
SBS	Chr12	14151801	G-C	Hetero	INTERGENIC
SBS	Chr12	14151802	G-T	Hetero	INTERGENIC
SBS	Chr12	17388807	C-T	Hetero	INTERGENIC
SBS	Chr12	17422440	G-A	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	11283	11284	1
Deletion	Chr2	441158	441173	15	OsKitaake02g006200
Deletion	Chr8	935433	935435	2
Deletion	Chr3	6280035	6280155	120
Deletion	Chr5	6328284	6328287	3
Deletion	Chr7	8965001	9789000	823999	34
Deletion	Chr7	9555241	9555246	5
Deletion	Chr8	14250206	14250213	7
Deletion	Chr1	15914864	15914883	19
Deletion	Chr12	18249098	18249099	1
Deletion	Chr11	19557001	19557017	16
Deletion	Chr11	20565652	20565653	1
Deletion	Chr12	26637595	26637602	7
Deletion	Chr2	28517450	28517453	3
Deletion	Chr2	36267594	36267602	8
Deletion	Chr4	36463062	36463065	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	11799323	Chr8	29175821	2
Translocation	Chr9	11800406	Chr8	29175820	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes