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Mutant Information

Mutant Name	FN1644-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1644-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26246308 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g255800
SBS Chr1 37111313 C-A Hetero INTERGENIC
SBS Chr1 40646089 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g441800
SBS Chr2 1559848 C-T Hetero INTERGENIC
SBS Chr2 24559283 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g244100
SBS Chr4 482460 C-T Homo INTERGENIC
SBS Chr5 1482231 G-A Hetero INTERGENIC
SBS Chr6 1569934 T-A Hetero INTRON
SBS Chr6 7481541 A-G Homo INTERGENIC
SBS Chr6 17139497 A-G Homo INTERGENIC
SBS Chr6 25138348 T-A Hetero INTERGENIC
SBS Chr7 4712657 A-T Homo INTERGENIC
SBS Chr7 6389989 C-T Homo INTERGENIC
SBS Chr7 15665523 C-A Homo INTERGENIC
SBS Chr7 25102982 T-A Hetero INTERGENIC
SBS Chr8 20114874 A-C Hetero INTERGENIC
SBS Chr9 19304121 T-A Hetero UTR_3_PRIME
SBS Chr9 19304122 C-A Hetero UTR_3_PRIME
SBS Chr11 20617293 C-T Hetero INTERGENIC
SBS Chr12 23791475 C-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3932469 3932488 19
Deletion Chr7 4712432 4712434 2
Deletion Chr4 9648543 9648550 7
Deletion Chr10 13659959 13659964 5
Deletion Chr11 14104486 14104487 1
Deletion Chr3 19500089 19500093 4
Deletion Chr7 19645001 19776000 130999 8
Deletion Chr1 25275759 25275773 14
Deletion Chr5 28529024 28529032 8
Deletion Chr5 28576725 28576735 10
Deletion Chr2 34528449 34528450 1
Deletion Chr2 35332312 35332322 10
Deletion Chr1 41265372 41265375 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8787170 8787172 1
Insertion Chr6 30677758 30677761 2
Insertion Chr9 19567556 19567559 2
Insertion Chr11 17272480 17272483 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 3946470 Chr2 35425495 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26246308	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g255800
SBS	Chr1	37111313	C-A	Hetero	INTERGENIC
SBS	Chr1	40646089	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g441800
SBS	Chr2	1559848	C-T	Hetero	INTERGENIC
SBS	Chr2	24559283	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g244100
SBS	Chr4	482460	C-T	Homo	INTERGENIC
SBS	Chr5	1482231	G-A	Hetero	INTERGENIC
SBS	Chr6	1569934	T-A	Hetero	INTRON
SBS	Chr6	7481541	A-G	Homo	INTERGENIC
SBS	Chr6	17139497	A-G	Homo	INTERGENIC
SBS	Chr6	25138348	T-A	Hetero	INTERGENIC
SBS	Chr7	4712657	A-T	Homo	INTERGENIC
SBS	Chr7	6389989	C-T	Homo	INTERGENIC
SBS	Chr7	15665523	C-A	Homo	INTERGENIC
SBS	Chr7	25102982	T-A	Hetero	INTERGENIC
SBS	Chr8	20114874	A-C	Hetero	INTERGENIC
SBS	Chr9	19304121	T-A	Hetero	UTR_3_PRIME
SBS	Chr9	19304122	C-A	Hetero	UTR_3_PRIME
SBS	Chr11	20617293	C-T	Hetero	INTERGENIC
SBS	Chr12	23791475	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3932469	3932488	19
Deletion	Chr7	4712432	4712434	2
Deletion	Chr4	9648543	9648550	7
Deletion	Chr10	13659959	13659964	5
Deletion	Chr11	14104486	14104487	1
Deletion	Chr3	19500089	19500093	4
Deletion	Chr7	19645001	19776000	130999	8
Deletion	Chr1	25275759	25275773	14
Deletion	Chr5	28529024	28529032	8
Deletion	Chr5	28576725	28576735	10
Deletion	Chr2	34528449	34528450	1
Deletion	Chr2	35332312	35332322	10
Deletion	Chr1	41265372	41265375	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	3946470	Chr2	35425495	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes