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Mutant Information

Mutant Name	FN1645-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1645-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Homo INTERGENIC
SBS Chr1 37311387 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g398000
SBS Chr1 37311388 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g398000
SBS Chr2 32154791 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g328600
SBS Chr3 34520154 T-C Hetero UTR_5_PRIME
SBS Chr5 4092012 C-A Hetero INTERGENIC
SBS Chr5 11970517 T-C Hetero INTERGENIC
SBS Chr6 7187613 T-A Hetero INTERGENIC
SBS Chr6 7187614 T-A Hetero INTERGENIC
SBS Chr6 14045250 T-G Homo INTERGENIC
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 7740803 G-A Hetero INTRON
SBS Chr7 16034864 G-A Hetero INTERGENIC
SBS Chr7 19259512 G-A Hetero INTRON
SBS Chr8 3976757 C-T Homo INTRON
SBS Chr8 13995283 G-A Hetero INTERGENIC
SBS Chr8 25898168 T-A Hetero INTERGENIC
SBS Chr10 23478730 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 10721782 C-T Hetero INTERGENIC
SBS Chr11 17892089 T-A Hetero INTERGENIC
SBS Chr11 24409116 G-C Hetero INTERGENIC
SBS Chr12 12828185 A-T Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 4052422 4052428 6
Deletion Chr9 4395554 4395555 1
Deletion Chr4 6927807 6927811 4
Deletion Chr6 7205001 7241000 35999 4
Deletion Chr11 9461483 9461484 1
Deletion Chr11 13806342 13806351 9
Deletion Chr2 19638107 19638116 9
Deletion Chr6 24130580 24130588 8 OsKitaake06g213900

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9730355 9730358 2
Insertion Chr7 26091602 26091606 3
Insertion Chr9 4671009 4671012 2
Insertion Chr3 20043406 20043419 12
Insertion Chr8 29297879 29297882 2
Insertion Chr12 11658594 11658596 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 5774487 Chr3 37769528 2
Translocation Chr6 5777288 Chr3 37769636 OsKitaake03g424500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Homo	INTERGENIC
SBS	Chr1	37311387	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g398000
SBS	Chr1	37311388	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g398000
SBS	Chr2	32154791	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g328600
SBS	Chr3	34520154	T-C	Hetero	UTR_5_PRIME
SBS	Chr5	4092012	C-A	Hetero	INTERGENIC
SBS	Chr5	11970517	T-C	Hetero	INTERGENIC
SBS	Chr6	7187613	T-A	Hetero	INTERGENIC
SBS	Chr6	7187614	T-A	Hetero	INTERGENIC
SBS	Chr6	14045250	T-G	Homo	INTERGENIC
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	7740803	G-A	Hetero	INTRON
SBS	Chr7	16034864	G-A	Hetero	INTERGENIC
SBS	Chr7	19259512	G-A	Hetero	INTRON
SBS	Chr8	3976757	C-T	Homo	INTRON
SBS	Chr8	13995283	G-A	Hetero	INTERGENIC
SBS	Chr8	25898168	T-A	Hetero	INTERGENIC
SBS	Chr10	23478730	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	10721782	C-T	Hetero	INTERGENIC
SBS	Chr11	17892089	T-A	Hetero	INTERGENIC
SBS	Chr11	24409116	G-C	Hetero	INTERGENIC
SBS	Chr12	12828185	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	4052422	4052428	6
Deletion	Chr9	4395554	4395555	1
Deletion	Chr4	6927807	6927811	4
Deletion	Chr6	7205001	7241000	35999	4
Deletion	Chr11	9461483	9461484	1
Deletion	Chr11	13806342	13806351	9
Deletion	Chr2	19638107	19638116	9
Deletion	Chr6	24130580	24130588	8	OsKitaake06g213900

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	5774487	Chr3	37769528	2
Translocation	Chr6	5777288	Chr3	37769636	OsKitaake03g424500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes