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Mutant Information

Mutant Name	FN1646-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1646-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12439230 G-A Hetero INTERGENIC
SBS Chr1 29900949 A-G Homo INTERGENIC
SBS Chr2 14791181 C-T Hetero INTERGENIC
SBS Chr2 18115900 T-G Hetero INTERGENIC
SBS Chr3 14255903 C-T Hetero INTERGENIC
SBS Chr3 14402071 G-A Hetero INTRON
SBS Chr4 3391120 G-C Hetero INTERGENIC
SBS Chr4 11264777 G-T Hetero INTERGENIC
SBS Chr4 11437786 C-T Hetero INTERGENIC
SBS Chr4 11916677 G-C Hetero INTERGENIC
SBS Chr4 15594199 G-T Hetero INTERGENIC
SBS Chr4 34310214 T-A Hetero INTERGENIC
SBS Chr5 26216746 C-T Hetero INTERGENIC
SBS Chr6 5878455 T-C Hetero INTERGENIC
SBS Chr7 10393773 A-G Hetero INTERGENIC
SBS Chr7 19736113 T-G Hetero INTERGENIC
SBS Chr7 22009277 C-A Hetero INTERGENIC
SBS Chr8 2828260 G-A Homo INTERGENIC
SBS Chr8 2828261 T-A Homo INTERGENIC
SBS Chr9 2050870 G-A Hetero INTERGENIC
SBS Chr9 2821186 C-G Hetero INTERGENIC
SBS Chr9 3681308 G-A Hetero INTERGENIC
SBS Chr9 20316775 C-T Hetero SPLICE_SITE_REGION
SBS Chr9 22452965 C-T Hetero START_GAINED
SBS Chr10 20874542 A-T Homo INTERGENIC
SBS Chr11 7025201 A-T Hetero INTRON
SBS Chr11 19154991 A-T Hetero INTERGENIC
SBS Chr11 25538439 C-G Hetero INTERGENIC
SBS Chr12 8283440 G-A Hetero INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2033622 2033623 1
Deletion Chr3 2685724 2685743 19
Deletion Chr9 4515876 4515879 3
Deletion Chr10 8096190 8096273 83
Deletion Chr7 10268465 10268467 2
Deletion Chr3 11283873 11283887 14
Deletion Chr5 12562611 12562631 20
Deletion Chr4 12737904 12737907 3
Deletion Chr3 17149870 17149872 2
Deletion Chr5 20548648 20548651 3
Deletion Chr5 22002048 22002050 2
Deletion Chr5 30258420 30258421 1
Deletion Chr1 35389977 35389989 12 OsKitaake01g373250
Deletion Chr1 39111752 39111756 4
Deletion Chr1 39941759 39941761 2
Deletion Chr1 43364228 43364230 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1347496 1347499 2
Insertion Chr8 10942498 10942505 6
Insertion Chr9 17885776 17885779 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 14301887 14523618
Inversion Chr12 14301895 14523635
Inversion Chr7 15409484 16153280
Inversion Chr7 15412970 16153278

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 3988434 Chr3 30090277 OsKitaake03g315200
Translocation Chr9 3989261 Chr3 30090285 OsKitaake03g315200
Translocation Chr6 21009535 Chr2 24924763 OsKitaake06g187200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12439230	G-A	Hetero	INTERGENIC
SBS	Chr1	29900949	A-G	Homo	INTERGENIC
SBS	Chr2	14791181	C-T	Hetero	INTERGENIC
SBS	Chr2	18115900	T-G	Hetero	INTERGENIC
SBS	Chr3	14255903	C-T	Hetero	INTERGENIC
SBS	Chr3	14402071	G-A	Hetero	INTRON
SBS	Chr4	3391120	G-C	Hetero	INTERGENIC
SBS	Chr4	11264777	G-T	Hetero	INTERGENIC
SBS	Chr4	11437786	C-T	Hetero	INTERGENIC
SBS	Chr4	11916677	G-C	Hetero	INTERGENIC
SBS	Chr4	15594199	G-T	Hetero	INTERGENIC
SBS	Chr4	34310214	T-A	Hetero	INTERGENIC
SBS	Chr5	26216746	C-T	Hetero	INTERGENIC
SBS	Chr6	5878455	T-C	Hetero	INTERGENIC
SBS	Chr7	10393773	A-G	Hetero	INTERGENIC
SBS	Chr7	19736113	T-G	Hetero	INTERGENIC
SBS	Chr7	22009277	C-A	Hetero	INTERGENIC
SBS	Chr8	2828260	G-A	Homo	INTERGENIC
SBS	Chr8	2828261	T-A	Homo	INTERGENIC
SBS	Chr9	2050870	G-A	Hetero	INTERGENIC
SBS	Chr9	2821186	C-G	Hetero	INTERGENIC
SBS	Chr9	3681308	G-A	Hetero	INTERGENIC
SBS	Chr9	20316775	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr9	22452965	C-T	Hetero	START_GAINED
SBS	Chr10	20874542	A-T	Homo	INTERGENIC
SBS	Chr11	7025201	A-T	Hetero	INTRON
SBS	Chr11	19154991	A-T	Hetero	INTERGENIC
SBS	Chr11	25538439	C-G	Hetero	INTERGENIC
SBS	Chr12	8283440	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2033622	2033623	1
Deletion	Chr3	2685724	2685743	19
Deletion	Chr9	4515876	4515879	3
Deletion	Chr10	8096190	8096273	83
Deletion	Chr7	10268465	10268467	2
Deletion	Chr3	11283873	11283887	14
Deletion	Chr5	12562611	12562631	20
Deletion	Chr4	12737904	12737907	3
Deletion	Chr3	17149870	17149872	2
Deletion	Chr5	20548648	20548651	3
Deletion	Chr5	22002048	22002050	2
Deletion	Chr5	30258420	30258421	1
Deletion	Chr1	35389977	35389989	12	OsKitaake01g373250
Deletion	Chr1	39111752	39111756	4
Deletion	Chr1	39941759	39941761	2
Deletion	Chr1	43364228	43364230	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	14301887	14523618
Inversion	Chr12	14301895	14523635
Inversion	Chr7	15409484	16153280
Inversion	Chr7	15412970	16153278

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes