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| Mutant Information |
|---|
| Mutant Name | FN1648-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1648-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 13
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5659305 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 30783089 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 15300835 | G-A | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr3 | 20284630 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8724308 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 2493329 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 3394737 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6753501 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g088000 |
| SBS | Chr7 | 24325284 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 25660854 | T-A | Homo | INTRON | |
| SBS | Chr11 | 27192582 | T-A | Homo | INTRON | |
| SBS | Chr12 | 3193032 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 8361931 | A-G | Homo | INTRON |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 3153569 | 3153583 | 14 | OsKitaake12g045500 |
| Deletion | Chr12 | 7527603 | 7527605 | 2 | |
| Deletion | Chr12 | 11141027 | 11141028 | 1 | |
| Deletion | Chr5 | 12424107 | 12424108 | 1 | |
| Deletion | Chr10 | 12834913 | 12834915 | 2 | |
| Deletion | Chr11 | 17463874 | 17463875 | 1 | |
| Deletion | Chr5 | 17756160 | 17756168 | 8 | |
| Deletion | Chr6 | 19024205 | 19024207 | 2 | |
| Deletion | Chr7 | 25335156 | 25335171 | 15 | |
| Deletion | Chr8 | 26502987 | 26502990 | 3 | OsKitaake08g212600 |
| Deletion | Chr2 | 31162502 | 31162510 | 8 | |
| Deletion | Chr3 | 34174606 | 34174607 | 1 |
Insertions: 5
Inversions: 67
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 108016 | 108459 | |
| Inversion | Chr12 | 343079 | 343384 | |
| Inversion | Chr1 | 637775 | 638101 | |
| Inversion | Chr8 | 1329373 | 1329659 | |
| Inversion | Chr8 | 1545863 | 1546211 | OsKitaake08g019100 |
| Inversion | Chr11 | 1606735 | 1606845 | OsKitaake11g021100 |
| Inversion | Chr6 | 2175650 | 2175925 | OsKitaake06g027900 |
| Inversion | Chr7 | 2468987 | 2469584 | OsKitaake07g033200 |
| Inversion | Chr5 | 2841130 | 2841488 | OsKitaake05g032600 |
| Inversion | Chr7 | 2991729 | 2991915 | OsKitaake07g037400 |
| Inversion | Chr8 | 3797347 | 3797484 | |
| Inversion | Chr10 | 4161293 | 4161640 | |
| Inversion | Chr8 | 4163254 | 4163466 | |
| Inversion | Chr4 | 5997646 | 5997932 | |
| Inversion | Chr5 | 7105981 | 7106239 | |
| Inversion | Chr2 | 7154523 | 7154842 | |
| Inversion | Chr1 | 7861198 | 7861580 | |
| Inversion | Chr11 | 7990931 | 7991322 | OsKitaake11g088100 |
| Inversion | Chr7 | 8095184 | 8095561 | |
| Inversion | Chr2 | 8226794 | 8227203 | |
| Inversion | Chr7 | 8720976 | 8721178 | OsKitaake07g092700 |
| Inversion | Chr3 | 8998929 | 8999087 | OsKitaake03g123600 |
| Inversion | Chr8 | 9591281 | 9591542 | |
| Inversion | Chr2 | 10471679 | 10472201 | |
| Inversion | Chr4 | 10587262 | 10587614 | OsKitaake04g055700 |
| Inversion | Chr3 | 11124062 | 11124389 | |
| Inversion | Chr3 | 11218375 | 11218553 | |
| Inversion | Chr3 | 11617238 | 11617707 | |
| Inversion | Chr6 | 11958193 | 11958375 | OsKitaake06g129900 |
| Inversion | Chr9 | 12017663 | 12018061 | OsKitaake09g076700 |
| Inversion | Chr5 | 12223135 | 12223340 | |
| Inversion | Chr10 | 12393265 | 12393523 | OsKitaake10g074500 |
| Inversion | Chr3 | 12802035 | 12802252 | OsKitaake03g172300 |
| Inversion | Chr2 | 13668418 | 13668790 | |
| Inversion | Chr1 | 13928877 | 13929044 | OsKitaake01g160600 |
| Inversion | Chr10 | 15594422 | 15594627 | OsKitaake10g101000 |
| Inversion | Chr11 | 18850757 | 18851079 | |
| Inversion | Chr4 | 20168050 | 20168529 | 2 |
| Inversion | Chr12 | 20398315 | 20398928 | |
| Inversion | Chr9 | 21416675 | 21417235 | OsKitaake09g186600 |
| Inversion | Chr9 | 21760115 | 21760617 | OsKitaake09g192300 |
| Inversion | Chr10 | 22070976 | 22071293 | |
| Inversion | Chr3 | 22251798 | 22252032 | |
| Inversion | Chr11 | 22999436 | 22999682 | OsKitaake11g182700 |
| Inversion | Chr4 | 23156351 | 23156566 | OsKitaake04g141000 |
| Inversion | Chr5 | 23179269 | 23179477 | |
| Inversion | Chr5 | 24709753 | 24710257 | 2 |
| Inversion | Chr2 | 25473452 | 25473838 | OsKitaake02g251300 |
| Inversion | Chr2 | 26097986 | 26098153 | |
| Inversion | Chr2 | 26319164 | 26319341 | OsKitaake02g262100 |
| Inversion | Chr8 | 26451095 | 26451255 | OsKitaake08g212100 |
| Inversion | Chr2 | 27816519 | 27816829 | OsKitaake02g279800 |
| Inversion | Chr11 | 27936084 | 27936380 | |
| Inversion | Chr8 | 28395682 | 29283905 | OsKitaake08g240200 |
| Inversion | Chr6 | 28427390 | 28427660 | OsKitaake06g260300 |
| Inversion | Chr7 | 29199566 | 29199670 | OsKitaake07g279800 |
| Inversion | Chr8 | 29283914 | 29285024 | |
| Inversion | Chr3 | 31027614 | 31028119 | OsKitaake03g325700 |
| Inversion | Chr2 | 31117878 | 31118181 | OsKitaake02g317900 |
| Inversion | Chr2 | 31281228 | 31281495 | OsKitaake02g320600 |
| Inversion | Chr3 | 31599890 | 31600211 | OsKitaake03g332901 |
| Inversion | Chr1 | 31645012 | 31645141 | OsKitaake01g318100 |
| Inversion | Chr4 | 31743233 | 31743688 | |
| Inversion | Chr2 | 32837095 | 32837495 | |
| Inversion | Chr1 | 33480998 | 33481243 | OsKitaake01g342600 |
| Inversion | Chr2 | 34764558 | 34764798 | OsKitaake02g362301 |
| Inversion | Chr1 | 42141788 | 42142045 | OsKitaake01g463000 |