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Mutant Information

Mutant Name	FN1650-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1650-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3601378 A-G Hetero INTRON
SBS Chr1 10263025 C-A Hetero INTERGENIC
SBS Chr1 19088170 C-A Homo INTERGENIC
SBS Chr1 20483113 T-C Homo INTERGENIC
SBS Chr1 26761178 C-T Hetero INTERGENIC
SBS Chr1 26974823 T-C Hetero INTRON
SBS Chr1 29273097 C-T Hetero INTRON
SBS Chr1 29998814 G-A Hetero INTERGENIC
SBS Chr2 18809957 C-T Hetero INTERGENIC
SBS Chr2 28441523 T-C Hetero INTERGENIC
SBS Chr2 29409115 A-G Hetero INTERGENIC
SBS Chr2 32105761 C-T Hetero INTERGENIC
SBS Chr2 36995390 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g396700
SBS Chr2 36995391 A-G Hetero SYNONYMOUS_CODING
SBS Chr3 12542138 G-T Homo INTERGENIC
SBS Chr3 13659546 C-T Homo INTERGENIC
SBS Chr3 17435240 T-C Hetero INTERGENIC
SBS Chr3 20350543 A-T Hetero START_GAINED
SBS Chr3 24184174 C-G Homo UTR_5_PRIME
SBS Chr3 29002161 G-A Hetero INTERGENIC
SBS Chr3 35567963 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g390100
SBS Chr3 37755977 G-A Hetero INTERGENIC
SBS Chr4 2686350 G-A Homo INTERGENIC
SBS Chr4 18944574 A-G Homo INTERGENIC
SBS Chr4 24992971 G-C Homo SYNONYMOUS_CODING
SBS Chr4 31446271 T-A Hetero INTERGENIC
SBS Chr5 2082564 C-T Hetero UTR_3_PRIME
SBS Chr5 8486921 C-A Hetero INTERGENIC
SBS Chr5 8486922 C-T Hetero INTERGENIC
SBS Chr5 8486923 G-A Hetero INTERGENIC
SBS Chr5 11046610 C-T Hetero INTERGENIC
SBS Chr5 16767580 T-A Hetero INTERGENIC
SBS Chr5 23022029 C-T Homo INTERGENIC
SBS Chr5 29983112 G-A Hetero INTERGENIC
SBS Chr6 2592343 C-A Homo UTR_5_PRIME
SBS Chr6 4481508 A-T Homo NON_SYNONYMOUS_CODING OsKitaake06g061700
SBS Chr6 10145903 T-A Homo INTERGENIC
SBS Chr7 3899860 A-T Hetero INTERGENIC
SBS Chr7 7932830 G-A Homo INTERGENIC
SBS Chr7 14957571 G-A Homo INTERGENIC
SBS Chr7 20827585 C-T Homo INTERGENIC
SBS Chr8 2602602 C-A Hetero INTERGENIC
SBS Chr8 13729881 T-G Hetero INTERGENIC
SBS Chr8 20614704 C-T Hetero INTERGENIC
SBS Chr9 750358 G-A Homo INTERGENIC
SBS Chr9 4271514 G-A Hetero INTERGENIC
SBS Chr9 7791875 G-A Hetero INTERGENIC
SBS Chr9 10205583 G-A Hetero UTR_5_PRIME
SBS Chr9 12825377 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 5395919 G-A Homo INTERGENIC
SBS Chr10 8906651 G-T Hetero INTERGENIC
SBS Chr10 12113453 C-T Homo INTERGENIC
SBS Chr11 4124537 C-T Homo INTERGENIC
SBS Chr11 7244865 G-T Homo INTERGENIC
SBS Chr11 7844550 T-C Homo INTERGENIC
SBS Chr12 20197477 G-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 5037257 5037260 3
Deletion Chr8 5148391 5148394 3
Deletion Chr12 6026976 6026982 6
Deletion Chr8 6518439 6518444 5
Deletion Chr10 7848813 7848823 10
Deletion Chr2 9741001 9781000 39999 4
Deletion Chr8 11625653 11625654 1
Deletion Chr2 13817486 13817651 165
Deletion Chr8 14445917 14445920 3
Deletion Chr6 15562700 15562702 2
Deletion Chr10 16296642 16296643 1 OsKitaake10g109700
Deletion Chr8 18532646 18532649 3
Deletion Chr4 25447877 25447886 9
Deletion Chr1 41621386 41621389 3
Deletion Chr1 43925547 43925550 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 23742355 23742358 2
Insertion Chr11 4030508 4030511 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 18206678 18835143
Inversion Chr3 18206680 18835158

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3601378	A-G	Hetero	INTRON
SBS	Chr1	10263025	C-A	Hetero	INTERGENIC
SBS	Chr1	19088170	C-A	Homo	INTERGENIC
SBS	Chr1	20483113	T-C	Homo	INTERGENIC
SBS	Chr1	26761178	C-T	Hetero	INTERGENIC
SBS	Chr1	26974823	T-C	Hetero	INTRON
SBS	Chr1	29273097	C-T	Hetero	INTRON
SBS	Chr1	29998814	G-A	Hetero	INTERGENIC
SBS	Chr2	18809957	C-T	Hetero	INTERGENIC
SBS	Chr2	28441523	T-C	Hetero	INTERGENIC
SBS	Chr2	29409115	A-G	Hetero	INTERGENIC
SBS	Chr2	32105761	C-T	Hetero	INTERGENIC
SBS	Chr2	36995390	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g396700
SBS	Chr2	36995391	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	12542138	G-T	Homo	INTERGENIC
SBS	Chr3	13659546	C-T	Homo	INTERGENIC
SBS	Chr3	17435240	T-C	Hetero	INTERGENIC
SBS	Chr3	20350543	A-T	Hetero	START_GAINED
SBS	Chr3	24184174	C-G	Homo	UTR_5_PRIME
SBS	Chr3	29002161	G-A	Hetero	INTERGENIC
SBS	Chr3	35567963	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g390100
SBS	Chr3	37755977	G-A	Hetero	INTERGENIC
SBS	Chr4	2686350	G-A	Homo	INTERGENIC
SBS	Chr4	18944574	A-G	Homo	INTERGENIC
SBS	Chr4	24992971	G-C	Homo	SYNONYMOUS_CODING
SBS	Chr4	31446271	T-A	Hetero	INTERGENIC
SBS	Chr5	2082564	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	8486921	C-A	Hetero	INTERGENIC
SBS	Chr5	8486922	C-T	Hetero	INTERGENIC
SBS	Chr5	8486923	G-A	Hetero	INTERGENIC
SBS	Chr5	11046610	C-T	Hetero	INTERGENIC
SBS	Chr5	16767580	T-A	Hetero	INTERGENIC
SBS	Chr5	23022029	C-T	Homo	INTERGENIC
SBS	Chr5	29983112	G-A	Hetero	INTERGENIC
SBS	Chr6	2592343	C-A	Homo	UTR_5_PRIME
SBS	Chr6	4481508	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g061700
SBS	Chr6	10145903	T-A	Homo	INTERGENIC
SBS	Chr7	3899860	A-T	Hetero	INTERGENIC
SBS	Chr7	7932830	G-A	Homo	INTERGENIC
SBS	Chr7	14957571	G-A	Homo	INTERGENIC
SBS	Chr7	20827585	C-T	Homo	INTERGENIC
SBS	Chr8	2602602	C-A	Hetero	INTERGENIC
SBS	Chr8	13729881	T-G	Hetero	INTERGENIC
SBS	Chr8	20614704	C-T	Hetero	INTERGENIC
SBS	Chr9	750358	G-A	Homo	INTERGENIC
SBS	Chr9	4271514	G-A	Hetero	INTERGENIC
SBS	Chr9	7791875	G-A	Hetero	INTERGENIC
SBS	Chr9	10205583	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	12825377	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	5395919	G-A	Homo	INTERGENIC
SBS	Chr10	8906651	G-T	Hetero	INTERGENIC
SBS	Chr10	12113453	C-T	Homo	INTERGENIC
SBS	Chr11	4124537	C-T	Homo	INTERGENIC
SBS	Chr11	7244865	G-T	Homo	INTERGENIC
SBS	Chr11	7844550	T-C	Homo	INTERGENIC
SBS	Chr12	20197477	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	5037257	5037260	3
Deletion	Chr8	5148391	5148394	3
Deletion	Chr12	6026976	6026982	6
Deletion	Chr8	6518439	6518444	5
Deletion	Chr10	7848813	7848823	10
Deletion	Chr2	9741001	9781000	39999	4
Deletion	Chr8	11625653	11625654	1
Deletion	Chr2	13817486	13817651	165
Deletion	Chr8	14445917	14445920	3
Deletion	Chr6	15562700	15562702	2
Deletion	Chr10	16296642	16296643	1	OsKitaake10g109700
Deletion	Chr8	18532646	18532649	3
Deletion	Chr4	25447877	25447886	9
Deletion	Chr1	41621386	41621389	3
Deletion	Chr1	43925547	43925550	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	18206678	18835143
Inversion	Chr3	18206680	18835158

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes