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Mutant Information

Mutant Name	FN1651-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1651-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21874219 G-A Hetero INTERGENIC
SBS Chr1 29039449 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g281800
SBS Chr1 29378704 T-C Hetero UTR_3_PRIME
SBS Chr1 29980991 G-A Hetero INTERGENIC
SBS Chr1 30627101 G-A Homo INTERGENIC
SBS Chr1 37677343 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g402100
SBS Chr2 4062819 A-G Hetero INTERGENIC
SBS Chr2 4503257 A-T Hetero INTERGENIC
SBS Chr2 4503258 G-T Hetero INTERGENIC
SBS Chr2 18386822 C-T Homo INTERGENIC
SBS Chr2 21311185 T-C Homo INTERGENIC
SBS Chr2 33225156 C-T Homo INTERGENIC
SBS Chr3 305883 T-C Homo UTR_3_PRIME
SBS Chr3 2990543 G-A Homo INTERGENIC
SBS Chr3 29434215 G-T Hetero INTERGENIC
SBS Chr4 2257994 C-G Hetero INTERGENIC
SBS Chr4 19951889 T-C Hetero INTERGENIC
SBS Chr4 35989200 A-T Hetero INTERGENIC
SBS Chr4 36199791 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g312800
SBS Chr5 16918540 C-A Hetero INTERGENIC
SBS Chr7 5538453 C-T Homo UTR_5_PRIME
SBS Chr7 6223809 C-T Homo INTERGENIC
SBS Chr7 26636164 A-G Hetero INTRON
SBS Chr7 27693612 C-A Hetero INTERGENIC
SBS Chr8 7050318 C-A Hetero INTERGENIC
SBS Chr8 15916389 G-T Hetero INTERGENIC
SBS Chr8 19352564 T-A Hetero INTRON
SBS Chr9 4499718 G-T Hetero INTERGENIC
SBS Chr10 18396664 G-A Hetero START_GAINED
SBS Chr11 5165056 C-T Hetero INTERGENIC
SBS Chr12 207467 C-T Hetero INTERGENIC
SBS Chr12 4036956 G-A Hetero INTERGENIC
SBS Chr12 6247130 G-A Hetero INTERGENIC
SBS Chr12 12633654 T-A Hetero INTERGENIC
SBS Chr12 20501203 A-T Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2926001 2990000 63999 10
Deletion Chr8 3261001 3336000 74999 10
Deletion Chr4 10698001 10799000 100999 2
Deletion Chr2 14577115 14577119 4
Deletion Chr3 18201384 18201400 16
Deletion Chr6 19368416 19368421 5
Deletion Chr2 20027712 20027713 1
Deletion Chr4 21760321 21760323 2
Deletion Chr8 26710871 26710872 1
Deletion Chr8 27051180 27051192 12
Deletion Chr6 27120836 27120843 7
Deletion Chr2 36674877 36674878 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 28849671 28849673 1
Insertion Chr5 30226856 30226864 7

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 13130809 13150143

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 14662069 Chr8 13252951
Translocation Chr10 14666077 Chr8 13252935

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21874219	G-A	Hetero	INTERGENIC
SBS	Chr1	29039449	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g281800
SBS	Chr1	29378704	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	29980991	G-A	Hetero	INTERGENIC
SBS	Chr1	30627101	G-A	Homo	INTERGENIC
SBS	Chr1	37677343	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g402100
SBS	Chr2	4062819	A-G	Hetero	INTERGENIC
SBS	Chr2	4503257	A-T	Hetero	INTERGENIC
SBS	Chr2	4503258	G-T	Hetero	INTERGENIC
SBS	Chr2	18386822	C-T	Homo	INTERGENIC
SBS	Chr2	21311185	T-C	Homo	INTERGENIC
SBS	Chr2	33225156	C-T	Homo	INTERGENIC
SBS	Chr3	305883	T-C	Homo	UTR_3_PRIME
SBS	Chr3	2990543	G-A	Homo	INTERGENIC
SBS	Chr3	29434215	G-T	Hetero	INTERGENIC
SBS	Chr4	2257994	C-G	Hetero	INTERGENIC
SBS	Chr4	19951889	T-C	Hetero	INTERGENIC
SBS	Chr4	35989200	A-T	Hetero	INTERGENIC
SBS	Chr4	36199791	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g312800
SBS	Chr5	16918540	C-A	Hetero	INTERGENIC
SBS	Chr7	5538453	C-T	Homo	UTR_5_PRIME
SBS	Chr7	6223809	C-T	Homo	INTERGENIC
SBS	Chr7	26636164	A-G	Hetero	INTRON
SBS	Chr7	27693612	C-A	Hetero	INTERGENIC
SBS	Chr8	7050318	C-A	Hetero	INTERGENIC
SBS	Chr8	15916389	G-T	Hetero	INTERGENIC
SBS	Chr8	19352564	T-A	Hetero	INTRON
SBS	Chr9	4499718	G-T	Hetero	INTERGENIC
SBS	Chr10	18396664	G-A	Hetero	START_GAINED
SBS	Chr11	5165056	C-T	Hetero	INTERGENIC
SBS	Chr12	207467	C-T	Hetero	INTERGENIC
SBS	Chr12	4036956	G-A	Hetero	INTERGENIC
SBS	Chr12	6247130	G-A	Hetero	INTERGENIC
SBS	Chr12	12633654	T-A	Hetero	INTERGENIC
SBS	Chr12	20501203	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2926001	2990000	63999	10
Deletion	Chr8	3261001	3336000	74999	10
Deletion	Chr4	10698001	10799000	100999	2
Deletion	Chr2	14577115	14577119	4
Deletion	Chr3	18201384	18201400	16
Deletion	Chr6	19368416	19368421	5
Deletion	Chr2	20027712	20027713	1
Deletion	Chr4	21760321	21760323	2
Deletion	Chr8	26710871	26710872	1
Deletion	Chr8	27051180	27051192	12
Deletion	Chr6	27120836	27120843	7
Deletion	Chr2	36674877	36674878	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13130809	13150143

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes