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Mutant Information

Mutant Name	FN1652-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1652-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25962098 G-A Homo INTERGENIC
SBS Chr2 3443414 G-C Hetero SYNONYMOUS_CODING
SBS Chr2 12837557 C-T Hetero INTRON
SBS Chr2 31126006 G-T Homo INTRON
SBS Chr3 23420609 C-T Hetero INTERGENIC
SBS Chr3 31540157 T-C Homo INTERGENIC
SBS Chr4 15387161 C-T Hetero INTERGENIC
SBS Chr4 16632671 G-A Hetero INTERGENIC
SBS Chr4 20970154 G-T Homo INTERGENIC
SBS Chr4 22523665 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g133100
SBS Chr4 29327269 G-A Hetero INTERGENIC
SBS Chr5 2945953 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g034300
SBS Chr5 8664466 A-T Hetero INTERGENIC
SBS Chr5 18523355 G-C Homo INTERGENIC
SBS Chr5 29695139 T-C Homo INTERGENIC
SBS Chr6 4467925 G-A Hetero INTERGENIC
SBS Chr6 10485099 T-A Homo INTERGENIC
SBS Chr6 10485100 G-A Homo INTERGENIC
SBS Chr6 10485101 G-A Homo INTERGENIC
SBS Chr6 25609536 T-G Hetero INTRON
SBS Chr6 27090657 G-T Hetero INTERGENIC
SBS Chr7 4081320 A-G Hetero INTERGENIC
SBS Chr7 4696070 C-T Hetero INTERGENIC
SBS Chr7 6772903 C-T Hetero INTERGENIC
SBS Chr7 10603794 A-T Hetero INTRON
SBS Chr7 20893573 T-C Homo INTERGENIC
SBS Chr8 1445073 T-A Hetero INTERGENIC
SBS Chr9 10164255 T-A Hetero INTERGENIC
SBS Chr10 18936433 G-A Hetero INTERGENIC
SBS Chr11 19976926 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 2424205 A-G Homo INTERGENIC
SBS Chr12 17842340 G-C Hetero INTERGENIC
SBS Chr12 19177003 C-A Hetero SYNONYMOUS_CODING
SBS Chr12 20327251 C-G Hetero INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1679405 1679409 4
Deletion Chr3 4339299 4339300 1
Deletion Chr2 4930112 4930113 1
Deletion Chr4 8105017 8105019 2
Deletion Chr10 8532856 8532858 2
Deletion Chr11 8928001 8948000 19999 2
Deletion Chr7 12168001 12238000 69999 OsKitaake07g109600
Deletion Chr11 12981900 12981902 2
Deletion Chr9 14253506 14253507 1 OsKitaake09g095900
Deletion Chr6 15742351 15742352 1
Deletion Chr6 16232070 16232079 9 OsKitaake06g155800
Deletion Chr1 17283622 17284286 664
Deletion Chr7 24612741 24612742 1
Deletion Chr11 24677930 24677932 2
Deletion Chr5 24716460 24716461 1 OsKitaake05g202100
Deletion Chr8 25908167 25908172 5
Deletion Chr4 27696001 27802000 105999 17

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27872045 27872048 2
Insertion Chr1 36723632 36723635 2
Insertion Chr1 41178299 41178301 1
Insertion Chr2 11583634 11583637 2
Insertion Chr7 28346703 28346706 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25962098	G-A	Homo	INTERGENIC
SBS	Chr2	3443414	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	12837557	C-T	Hetero	INTRON
SBS	Chr2	31126006	G-T	Homo	INTRON
SBS	Chr3	23420609	C-T	Hetero	INTERGENIC
SBS	Chr3	31540157	T-C	Homo	INTERGENIC
SBS	Chr4	15387161	C-T	Hetero	INTERGENIC
SBS	Chr4	16632671	G-A	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Homo	INTERGENIC
SBS	Chr4	22523665	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g133100
SBS	Chr4	29327269	G-A	Hetero	INTERGENIC
SBS	Chr5	2945953	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g034300
SBS	Chr5	8664466	A-T	Hetero	INTERGENIC
SBS	Chr5	18523355	G-C	Homo	INTERGENIC
SBS	Chr5	29695139	T-C	Homo	INTERGENIC
SBS	Chr6	4467925	G-A	Hetero	INTERGENIC
SBS	Chr6	10485099	T-A	Homo	INTERGENIC
SBS	Chr6	10485100	G-A	Homo	INTERGENIC
SBS	Chr6	10485101	G-A	Homo	INTERGENIC
SBS	Chr6	25609536	T-G	Hetero	INTRON
SBS	Chr6	27090657	G-T	Hetero	INTERGENIC
SBS	Chr7	4081320	A-G	Hetero	INTERGENIC
SBS	Chr7	4696070	C-T	Hetero	INTERGENIC
SBS	Chr7	6772903	C-T	Hetero	INTERGENIC
SBS	Chr7	10603794	A-T	Hetero	INTRON
SBS	Chr7	20893573	T-C	Homo	INTERGENIC
SBS	Chr8	1445073	T-A	Hetero	INTERGENIC
SBS	Chr9	10164255	T-A	Hetero	INTERGENIC
SBS	Chr10	18936433	G-A	Hetero	INTERGENIC
SBS	Chr11	19976926	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	2424205	A-G	Homo	INTERGENIC
SBS	Chr12	17842340	G-C	Hetero	INTERGENIC
SBS	Chr12	19177003	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	20327251	C-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1679405	1679409	4
Deletion	Chr3	4339299	4339300	1
Deletion	Chr2	4930112	4930113	1
Deletion	Chr4	8105017	8105019	2
Deletion	Chr10	8532856	8532858	2
Deletion	Chr11	8928001	8948000	19999	2
Deletion	Chr7	12168001	12238000	69999	OsKitaake07g109600
Deletion	Chr11	12981900	12981902	2
Deletion	Chr9	14253506	14253507	1	OsKitaake09g095900
Deletion	Chr6	15742351	15742352	1
Deletion	Chr6	16232070	16232079	9	OsKitaake06g155800
Deletion	Chr1	17283622	17284286	664
Deletion	Chr7	24612741	24612742	1
Deletion	Chr11	24677930	24677932	2
Deletion	Chr5	24716460	24716461	1	OsKitaake05g202100
Deletion	Chr8	25908167	25908172	5
Deletion	Chr4	27696001	27802000	105999	17

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes