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Mutant Information

Mutant Name	FN1657-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1657-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9733012 G-A Hetero INTERGENIC
SBS Chr1 18884849 T-C Hetero INTERGENIC
SBS Chr2 13000434 G-A Homo INTERGENIC
SBS Chr2 33592547 A-T Homo INTERGENIC
SBS Chr3 5522112 T-C Hetero INTRON
SBS Chr3 6982655 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 17599869 A-G Hetero INTERGENIC
SBS Chr3 21419979 T-C Hetero INTERGENIC
SBS Chr3 30522397 C-A Hetero INTERGENIC
SBS Chr4 33600493 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g278100
SBS Chr5 12604421 C-A Hetero INTERGENIC
SBS Chr5 13300106 C-A Hetero INTERGENIC
SBS Chr6 15665303 C-A Hetero INTRON
SBS Chr6 30887933 A-G Homo INTERGENIC
SBS Chr7 6768865 T-A Homo INTERGENIC
SBS Chr7 21613897 A-C Homo INTRON
SBS Chr8 8716849 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 23640992 C-T Hetero INTERGENIC
SBS Chr8 27812534 C-T Hetero UTR_5_PRIME
SBS Chr8 29051884 C-A Hetero INTRON
SBS Chr9 15354952 G-A Homo INTERGENIC
SBS Chr9 16063376 C-A Homo INTERGENIC
SBS Chr11 13014038 C-A Hetero INTERGENIC
SBS Chr11 14119412 C-T Hetero INTERGENIC
SBS Chr11 15324785 G-A Hetero INTERGENIC
SBS Chr11 15541688 T-C Hetero UTR_3_PRIME
SBS Chr12 15617651 T-G Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1103893 1103901 8
Deletion Chr11 2033435 2033444 9
Deletion Chr5 5045716 5045719 3
Deletion Chr8 5910467 5910472 5
Deletion Chr12 8768363 8768367 4
Deletion Chr6 8976722 8976734 12
Deletion Chr12 10168117 10168119 2
Deletion Chr11 12155577 12155582 5
Deletion Chr6 12704034 12704046 12
Deletion Chr2 14497800 14497803 3
Deletion Chr4 22992221 22992229 8
Deletion Chr7 24558736 24558745 9
Deletion Chr5 29885089 29885093 4
Deletion Chr2 35386924 35386929 5
Deletion Chr1 38393195 38393196 1 OsKitaake01g409900

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10699739 10699742 2
Insertion Chr3 27642640 27642643 2
Insertion Chr7 5656390 5656393 2
Insertion Chr8 18990883 18990886 2
Insertion Chr10 23236614 23236616 1
Insertion Chr3 8671974 8671978 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 16229676 16511317 OsKitaake05g126300
Inversion Chr5 16229691 16511332 OsKitaake05g126300
Inversion Chr6 23061775 23605330
Inversion Chr6 23061778 23605335

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9733012	G-A	Hetero	INTERGENIC
SBS	Chr1	18884849	T-C	Hetero	INTERGENIC
SBS	Chr2	13000434	G-A	Homo	INTERGENIC
SBS	Chr2	33592547	A-T	Homo	INTERGENIC
SBS	Chr3	5522112	T-C	Hetero	INTRON
SBS	Chr3	6982655	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	17599869	A-G	Hetero	INTERGENIC
SBS	Chr3	21419979	T-C	Hetero	INTERGENIC
SBS	Chr3	30522397	C-A	Hetero	INTERGENIC
SBS	Chr4	33600493	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g278100
SBS	Chr5	12604421	C-A	Hetero	INTERGENIC
SBS	Chr5	13300106	C-A	Hetero	INTERGENIC
SBS	Chr6	15665303	C-A	Hetero	INTRON
SBS	Chr6	30887933	A-G	Homo	INTERGENIC
SBS	Chr7	6768865	T-A	Homo	INTERGENIC
SBS	Chr7	21613897	A-C	Homo	INTRON
SBS	Chr8	8716849	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	23640992	C-T	Hetero	INTERGENIC
SBS	Chr8	27812534	C-T	Hetero	UTR_5_PRIME
SBS	Chr8	29051884	C-A	Hetero	INTRON
SBS	Chr9	15354952	G-A	Homo	INTERGENIC
SBS	Chr9	16063376	C-A	Homo	INTERGENIC
SBS	Chr11	13014038	C-A	Hetero	INTERGENIC
SBS	Chr11	14119412	C-T	Hetero	INTERGENIC
SBS	Chr11	15324785	G-A	Hetero	INTERGENIC
SBS	Chr11	15541688	T-C	Hetero	UTR_3_PRIME
SBS	Chr12	15617651	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1103893	1103901	8
Deletion	Chr11	2033435	2033444	9
Deletion	Chr5	5045716	5045719	3
Deletion	Chr8	5910467	5910472	5
Deletion	Chr12	8768363	8768367	4
Deletion	Chr6	8976722	8976734	12
Deletion	Chr12	10168117	10168119	2
Deletion	Chr11	12155577	12155582	5
Deletion	Chr6	12704034	12704046	12
Deletion	Chr2	14497800	14497803	3
Deletion	Chr4	22992221	22992229	8
Deletion	Chr7	24558736	24558745	9
Deletion	Chr5	29885089	29885093	4
Deletion	Chr2	35386924	35386929	5
Deletion	Chr1	38393195	38393196	1	OsKitaake01g409900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	16229676	16511317	OsKitaake05g126300
Inversion	Chr5	16229691	16511332	OsKitaake05g126300
Inversion	Chr6	23061775	23605330
Inversion	Chr6	23061778	23605335

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes