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Mutant Information

Mutant Name	FN1660-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1660-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19414556 T-C Hetero INTERGENIC
SBS Chr1 41277504 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g451000
SBS Chr2 14868035 C-T Hetero INTERGENIC
SBS Chr2 16135817 C-T Homo INTRON
SBS Chr3 3255895 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g045900
SBS Chr3 9543407 G-C Hetero INTERGENIC
SBS Chr3 12037393 G-A Hetero INTERGENIC
SBS Chr3 23474075 C-T Hetero INTERGENIC
SBS Chr3 26963560 C-T Homo INTERGENIC
SBS Chr3 30273724 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g317700
SBS Chr4 5371711 C-T Hetero INTERGENIC
SBS Chr4 14108395 A-G Hetero INTERGENIC
SBS Chr4 17412773 C-A Hetero INTERGENIC
SBS Chr4 17412774 C-T Hetero INTERGENIC
SBS Chr4 22646228 A-T Hetero INTRON
SBS Chr4 25027810 G-A Hetero INTERGENIC
SBS Chr4 25155759 T-A Hetero INTERGENIC
SBS Chr4 27089267 C-T Hetero INTERGENIC
SBS Chr4 30120242 C-T Hetero INTERGENIC
SBS Chr5 3260921 C-A Hetero INTERGENIC
SBS Chr5 28868109 T-C Hetero INTERGENIC
SBS Chr6 1250967 C-T Hetero INTERGENIC
SBS Chr6 5573902 G-T Homo INTERGENIC
SBS Chr6 6048284 C-T Hetero INTERGENIC
SBS Chr6 10492287 G-A Homo INTERGENIC
SBS Chr6 15461775 T-C Hetero INTERGENIC
SBS Chr6 21350730 A-G Hetero INTERGENIC
SBS Chr6 26132214 A-G Homo INTERGENIC
SBS Chr7 9356442 A-C Hetero INTERGENIC
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 26896685 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g250600
SBS Chr8 5956273 T-C Hetero INTERGENIC
SBS Chr8 16072704 C-T Hetero INTERGENIC
SBS Chr8 24718127 G-A Homo INTERGENIC
SBS Chr8 24718128 C-A Homo INTERGENIC
SBS Chr9 10132880 A-G Hetero INTERGENIC
SBS Chr9 17711621 T-G Hetero INTERGENIC
SBS Chr10 14138152 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g087900
SBS Chr11 5742961 A-T Hetero UTR_3_PRIME
SBS Chr11 7022074 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g080400
SBS Chr11 11811848 C-T Hetero INTERGENIC
SBS Chr11 13415684 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g115300
SBS Chr11 13871683 A-T Hetero INTERGENIC
SBS Chr11 21393886 A-G Hetero INTERGENIC
SBS Chr12 8594546 C-A Hetero INTERGENIC
SBS Chr12 10350888 C-A Hetero INTRON
SBS Chr12 13974545 A-T Homo INTERGENIC
SBS Chr12 22709884 A-G Hetero INTRON

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2659001 2671000 11999
Deletion Chr1 5646001 5671000 24999 OsKitaake01g072400
Deletion Chr1 6637001 6659000 21999 4
Deletion Chr11 10513934 10513935 1
Deletion Chr12 17255299 17255310 11
Deletion Chr8 20806680 20806694 14
Deletion Chr11 24444152 24444156 4
Deletion Chr1 26984203 26984211 8

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 19251278 19875850
Inversion Chr8 19251281 19875855
Inversion Chr4 31670372 31914287 OsKitaake04g249800
Inversion Chr4 31670375 31914290 OsKitaake04g249800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 455326 Chr6 11392193 2
Translocation Chr9 455334 Chr6 11391852 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19414556	T-C	Hetero	INTERGENIC
SBS	Chr1	41277504	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g451000
SBS	Chr2	14868035	C-T	Hetero	INTERGENIC
SBS	Chr2	16135817	C-T	Homo	INTRON
SBS	Chr3	3255895	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g045900
SBS	Chr3	9543407	G-C	Hetero	INTERGENIC
SBS	Chr3	12037393	G-A	Hetero	INTERGENIC
SBS	Chr3	23474075	C-T	Hetero	INTERGENIC
SBS	Chr3	26963560	C-T	Homo	INTERGENIC
SBS	Chr3	30273724	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g317700
SBS	Chr4	5371711	C-T	Hetero	INTERGENIC
SBS	Chr4	14108395	A-G	Hetero	INTERGENIC
SBS	Chr4	17412773	C-A	Hetero	INTERGENIC
SBS	Chr4	17412774	C-T	Hetero	INTERGENIC
SBS	Chr4	22646228	A-T	Hetero	INTRON
SBS	Chr4	25027810	G-A	Hetero	INTERGENIC
SBS	Chr4	25155759	T-A	Hetero	INTERGENIC
SBS	Chr4	27089267	C-T	Hetero	INTERGENIC
SBS	Chr4	30120242	C-T	Hetero	INTERGENIC
SBS	Chr5	3260921	C-A	Hetero	INTERGENIC
SBS	Chr5	28868109	T-C	Hetero	INTERGENIC
SBS	Chr6	1250967	C-T	Hetero	INTERGENIC
SBS	Chr6	5573902	G-T	Homo	INTERGENIC
SBS	Chr6	6048284	C-T	Hetero	INTERGENIC
SBS	Chr6	10492287	G-A	Homo	INTERGENIC
SBS	Chr6	15461775	T-C	Hetero	INTERGENIC
SBS	Chr6	21350730	A-G	Hetero	INTERGENIC
SBS	Chr6	26132214	A-G	Homo	INTERGENIC
SBS	Chr7	9356442	A-C	Hetero	INTERGENIC
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	26896685	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g250600
SBS	Chr8	5956273	T-C	Hetero	INTERGENIC
SBS	Chr8	16072704	C-T	Hetero	INTERGENIC
SBS	Chr8	24718127	G-A	Homo	INTERGENIC
SBS	Chr8	24718128	C-A	Homo	INTERGENIC
SBS	Chr9	10132880	A-G	Hetero	INTERGENIC
SBS	Chr9	17711621	T-G	Hetero	INTERGENIC
SBS	Chr10	14138152	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g087900
SBS	Chr11	5742961	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	7022074	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g080400
SBS	Chr11	11811848	C-T	Hetero	INTERGENIC
SBS	Chr11	13415684	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g115300
SBS	Chr11	13871683	A-T	Hetero	INTERGENIC
SBS	Chr11	21393886	A-G	Hetero	INTERGENIC
SBS	Chr12	8594546	C-A	Hetero	INTERGENIC
SBS	Chr12	10350888	C-A	Hetero	INTRON
SBS	Chr12	13974545	A-T	Homo	INTERGENIC
SBS	Chr12	22709884	A-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2659001	2671000	11999
Deletion	Chr1	5646001	5671000	24999	OsKitaake01g072400
Deletion	Chr1	6637001	6659000	21999	4
Deletion	Chr11	10513934	10513935	1
Deletion	Chr12	17255299	17255310	11
Deletion	Chr8	20806680	20806694	14
Deletion	Chr11	24444152	24444156	4
Deletion	Chr1	26984203	26984211	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	19251278	19875850
Inversion	Chr8	19251281	19875855
Inversion	Chr4	31670372	31914287	OsKitaake04g249800
Inversion	Chr4	31670375	31914290	OsKitaake04g249800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes