Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1661-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1661-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4052518 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 38383936 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 38832820 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 3453952 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g050200 |
| SBS | Chr2 | 11634729 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27707475 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 9477821 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33317780 | G-A | Homo | START_GAINED | |
| SBS | Chr6 | 14822735 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 13598515 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 22004390 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 23717794 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 25992597 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15461235 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 19058858 | G-C | Hetero | UTR_5_PRIME | |
| SBS | Chr9 | 1687501 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16242621 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1671906 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 13236099 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1242512 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 13421996 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 28268192 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 98041 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 98042 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 98106 | C-T | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 2621390 | 2621391 | 1 | OsKitaake06g035700 |
| Deletion | Chr6 | 5205032 | 5205035 | 3 | |
| Deletion | Chr4 | 5614916 | 5614919 | 3 | OsKitaake04g027700 |
| Deletion | Chr9 | 7801649 | 7801650 | 1 | |
| Deletion | Chr8 | 10945177 | 10945190 | 13 | |
| Deletion | Chr7 | 14587051 | 14587055 | 4 | |
| Deletion | Chr12 | 19095947 | 19095968 | 21 | |
| Deletion | Chr11 | 21634733 | 21634737 | 4 | |
| Deletion | Chr7 | 22117651 | 22117657 | 6 | |
| Deletion | Chr2 | 23100949 | 23100950 | 1 | |
| Deletion | Chr8 | 25886351 | 25886352 | 1 | |
| Deletion | Chr1 | 26032918 | 26032925 | 7 | |
| Deletion | Chr5 | 26178102 | 26178109 | 7 | |
| Deletion | Chr12 | 26505280 | 26505281 | 1 | |
| Deletion | Chr3 | 36584159 | 36584166 | 7 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 30810632 | 30810635 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 25964459 | 26349829 | 2 |
| Inversion | Chr7 | 25964466 | 26349833 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 7455029 | Chr1 | 42722787 |