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Mutant Information

Mutant Name	FN1662-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1662-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4025702 C-T Hetero INTRON
SBS Chr1 4329308 T-C Hetero INTRON
SBS Chr1 5074371 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 20515407 C-T Homo INTERGENIC
SBS Chr2 17841914 C-T Homo INTERGENIC
SBS Chr2 33401754 C-T Homo INTERGENIC
SBS Chr2 33401757 G-T Homo INTERGENIC
SBS Chr4 2852878 C-A Homo INTERGENIC
SBS Chr4 7451928 G-A Homo INTERGENIC
SBS Chr4 14565645 G-A Hetero INTERGENIC
SBS Chr4 15639261 A-G Hetero INTERGENIC
SBS Chr4 17094666 G-A Hetero INTERGENIC
SBS Chr5 10756873 G-T Hetero INTERGENIC
SBS Chr5 20227132 C-A Hetero INTERGENIC
SBS Chr5 24814545 G-A Homo SYNONYMOUS_CODING
SBS Chr6 18579934 G-A Homo INTERGENIC
SBS Chr7 10861985 T-A Hetero INTRON
SBS Chr7 14986822 C-T Homo INTERGENIC
SBS Chr8 17061472 A-T Hetero INTERGENIC
SBS Chr9 16787801 C-T Hetero INTERGENIC
SBS Chr10 4281156 G-A Hetero INTERGENIC
SBS Chr11 1155597 A-T Hetero INTERGENIC
SBS Chr11 5175748 C-T Hetero INTERGENIC
SBS Chr11 13628454 C-T Hetero INTERGENIC
SBS Chr11 21031269 A-G Hetero INTERGENIC
SBS Chr11 21676509 G-A Hetero INTERGENIC
SBS Chr11 26318299 C-T Hetero INTERGENIC
SBS Chr12 9137860 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 3372391 3372394 3
Deletion Chr1 4053688 4054009 321
Deletion Chr8 6272670 6272673 3
Deletion Chr11 12521222 12521707 485
Deletion Chr12 13915868 13915872 4
Deletion Chr3 14099001 14135000 35999 4
Deletion Chr1 14407692 14407701 9
Deletion Chr3 15084747 15084753 6
Deletion Chr12 19933620 19933622 2
Deletion Chr7 24069478 24069483 5
Deletion Chr2 27791231 27791232 1 OsKitaake02g279400

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18053358 18053361 2
Insertion Chr6 2321053 2321057 3 OsKitaake06g030200
Insertion Chr7 6809834 6809837 2
Insertion Chr8 16386294 16386297 2
Insertion Chr4 9890301 9890364 62
Insertion Chr10 21368120 21368123 2
Insertion Chr12 14662628 14662630 1

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 1908799 2165686 OsKitaake01g023000
Inversion Chr1 2049946 2165679 OsKitaake01g025600
Inversion Chr7 7047813 7078725 OsKitaake07g080200
Inversion Chr7 7047815 7078727 OsKitaake07g080200
Inversion Chr6 11256135 11760357 OsKitaake06g124500
Inversion Chr6 11256140 11760359 OsKitaake06g124500
Inversion Chr5 11281478 11658828
Inversion Chr5 11281481 11659213
Inversion Chr3 14097575 14157429
Inversion Chr3 14134307 14157439 OsKitaake03g184700

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 21375490 Chr7 21947446

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4025702	C-T	Hetero	INTRON
SBS	Chr1	4329308	T-C	Hetero	INTRON
SBS	Chr1	5074371	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	20515407	C-T	Homo	INTERGENIC
SBS	Chr2	17841914	C-T	Homo	INTERGENIC
SBS	Chr2	33401754	C-T	Homo	INTERGENIC
SBS	Chr2	33401757	G-T	Homo	INTERGENIC
SBS	Chr4	2852878	C-A	Homo	INTERGENIC
SBS	Chr4	7451928	G-A	Homo	INTERGENIC
SBS	Chr4	14565645	G-A	Hetero	INTERGENIC
SBS	Chr4	15639261	A-G	Hetero	INTERGENIC
SBS	Chr4	17094666	G-A	Hetero	INTERGENIC
SBS	Chr5	10756873	G-T	Hetero	INTERGENIC
SBS	Chr5	20227132	C-A	Hetero	INTERGENIC
SBS	Chr5	24814545	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	18579934	G-A	Homo	INTERGENIC
SBS	Chr7	10861985	T-A	Hetero	INTRON
SBS	Chr7	14986822	C-T	Homo	INTERGENIC
SBS	Chr8	17061472	A-T	Hetero	INTERGENIC
SBS	Chr9	16787801	C-T	Hetero	INTERGENIC
SBS	Chr10	4281156	G-A	Hetero	INTERGENIC
SBS	Chr11	1155597	A-T	Hetero	INTERGENIC
SBS	Chr11	5175748	C-T	Hetero	INTERGENIC
SBS	Chr11	13628454	C-T	Hetero	INTERGENIC
SBS	Chr11	21031269	A-G	Hetero	INTERGENIC
SBS	Chr11	21676509	G-A	Hetero	INTERGENIC
SBS	Chr11	26318299	C-T	Hetero	INTERGENIC
SBS	Chr12	9137860	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	3372391	3372394	3
Deletion	Chr1	4053688	4054009	321
Deletion	Chr8	6272670	6272673	3
Deletion	Chr11	12521222	12521707	485
Deletion	Chr12	13915868	13915872	4
Deletion	Chr3	14099001	14135000	35999	4
Deletion	Chr1	14407692	14407701	9
Deletion	Chr3	15084747	15084753	6
Deletion	Chr12	19933620	19933622	2
Deletion	Chr7	24069478	24069483	5
Deletion	Chr2	27791231	27791232	1	OsKitaake02g279400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1908799	2165686	OsKitaake01g023000
Inversion	Chr1	2049946	2165679	OsKitaake01g025600
Inversion	Chr7	7047813	7078725	OsKitaake07g080200
Inversion	Chr7	7047815	7078727	OsKitaake07g080200
Inversion	Chr6	11256135	11760357	OsKitaake06g124500
Inversion	Chr6	11256140	11760359	OsKitaake06g124500
Inversion	Chr5	11281478	11658828
Inversion	Chr5	11281481	11659213
Inversion	Chr3	14097575	14157429
Inversion	Chr3	14134307	14157439	OsKitaake03g184700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes