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Mutant Information

Mutant Name	FN1665-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1665-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4177574 T-C Hetero INTERGENIC
SBS Chr1 8824501 G-A Hetero INTERGENIC
SBS Chr1 16417320 T-A Hetero INTERGENIC
SBS Chr1 16417322 C-A Hetero INTERGENIC
SBS Chr1 24243868 C-T Hetero INTERGENIC
SBS Chr1 25861217 T-A Hetero INTERGENIC
SBS Chr2 27152945 C-G Homo INTERGENIC
SBS Chr3 27062035 G-A Homo INTRON
SBS Chr4 651466 G-A Homo UTR_5_PRIME
SBS Chr4 1371060 T-A Homo INTERGENIC
SBS Chr4 29984535 G-A Hetero INTERGENIC
SBS Chr5 3740937 A-T Homo INTERGENIC
SBS Chr5 5849002 G-T Homo INTERGENIC
SBS Chr5 13456386 A-G Hetero INTRON
SBS Chr5 30166877 T-A Homo INTERGENIC
SBS Chr6 7190932 T-C Hetero SYNONYMOUS_CODING
SBS Chr6 17068146 T-C Hetero INTRON
SBS Chr6 17304577 G-T Hetero INTERGENIC
SBS Chr6 18474513 T-C Hetero INTERGENIC
SBS Chr6 24575778 T-A Homo UTR_5_PRIME
SBS Chr7 5242218 C-T Homo SYNONYMOUS_CODING
SBS Chr7 10199668 T-A Homo INTERGENIC
SBS Chr7 11244997 A-G Hetero INTERGENIC
SBS Chr7 17806436 G-T Homo INTERGENIC
SBS Chr7 21788229 G-A Hetero INTERGENIC
SBS Chr7 22274123 C-T Hetero INTERGENIC
SBS Chr8 9191571 A-C Homo INTERGENIC
SBS Chr8 18076371 C-T Homo INTERGENIC
SBS Chr8 19961737 C-T Hetero INTERGENIC
SBS Chr9 7002646 A-T Hetero INTERGENIC
SBS Chr9 21205015 C-T Hetero INTERGENIC
SBS Chr11 13217313 G-T Hetero INTERGENIC
SBS Chr11 20206281 T-C Hetero INTERGENIC
SBS Chr11 27701472 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g226200
SBS Chr12 2355067 G-T Homo INTERGENIC
SBS Chr12 3830643 G-C Homo INTERGENIC
SBS Chr12 21354335 T-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 82182 82184 2
Deletion Chr12 472001 526000 53999 8
Deletion Chr4 663869 663870 1 OsKitaake04g005300
Deletion Chr7 1291353 1291358 5
Deletion Chr12 1523001 1600000 76999 14
Deletion Chr11 3563691 3563692 1
Deletion Chr8 3617893 3617894 1
Deletion Chr8 4889806 4890174 368
Deletion Chr4 5135079 5135098 19
Deletion Chr1 5717698 5717701 3
Deletion Chr10 8552030 8552034 4
Deletion Chr3 10747220 10747222 2
Deletion Chr8 11490036 11490047 11
Deletion Chr8 13202001 13218000 15999
Deletion Chr11 19047907 19047915 8
Deletion Chr3 20043928 20044236 308
Deletion Chr1 23003301 23003302 1
Deletion Chr2 24580603 24580609 6
Deletion Chr5 25137493 25137496 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30002164 30002167 2
Insertion Chr6 30573572 30573574 1
Insertion Chr7 14736625 14736628 2
Insertion Chr11 19826173 19826176 2
Insertion Chr5 30239995 30240003 7

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 4064521 4089722 OsKitaake06g057500
Inversion Chr6 4068347 4089725 OsKitaake06g057500
Inversion Chr3 8176781 8574860 2
Inversion Chr3 8577057 8597087 OsKitaake03g118100
Inversion Chr2 14236064 15088642
Inversion Chr2 14304493 15088601
Inversion Chr4 36121726 36173884 OsKitaake04g311400

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1522214 Chr4 36173883
Translocation Chr12 1524854 Chr4 36121722 2
Translocation Chr2 5730614 Chr1 23498670 OsKitaake02g079400
Translocation Chr2 5730738 Chr1 23498801 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4177574	T-C	Hetero	INTERGENIC
SBS	Chr1	8824501	G-A	Hetero	INTERGENIC
SBS	Chr1	16417320	T-A	Hetero	INTERGENIC
SBS	Chr1	16417322	C-A	Hetero	INTERGENIC
SBS	Chr1	24243868	C-T	Hetero	INTERGENIC
SBS	Chr1	25861217	T-A	Hetero	INTERGENIC
SBS	Chr2	27152945	C-G	Homo	INTERGENIC
SBS	Chr3	27062035	G-A	Homo	INTRON
SBS	Chr4	651466	G-A	Homo	UTR_5_PRIME
SBS	Chr4	1371060	T-A	Homo	INTERGENIC
SBS	Chr4	29984535	G-A	Hetero	INTERGENIC
SBS	Chr5	3740937	A-T	Homo	INTERGENIC
SBS	Chr5	5849002	G-T	Homo	INTERGENIC
SBS	Chr5	13456386	A-G	Hetero	INTRON
SBS	Chr5	30166877	T-A	Homo	INTERGENIC
SBS	Chr6	7190932	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	17068146	T-C	Hetero	INTRON
SBS	Chr6	17304577	G-T	Hetero	INTERGENIC
SBS	Chr6	18474513	T-C	Hetero	INTERGENIC
SBS	Chr6	24575778	T-A	Homo	UTR_5_PRIME
SBS	Chr7	5242218	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	10199668	T-A	Homo	INTERGENIC
SBS	Chr7	11244997	A-G	Hetero	INTERGENIC
SBS	Chr7	17806436	G-T	Homo	INTERGENIC
SBS	Chr7	21788229	G-A	Hetero	INTERGENIC
SBS	Chr7	22274123	C-T	Hetero	INTERGENIC
SBS	Chr8	9191571	A-C	Homo	INTERGENIC
SBS	Chr8	18076371	C-T	Homo	INTERGENIC
SBS	Chr8	19961737	C-T	Hetero	INTERGENIC
SBS	Chr9	7002646	A-T	Hetero	INTERGENIC
SBS	Chr9	21205015	C-T	Hetero	INTERGENIC
SBS	Chr11	13217313	G-T	Hetero	INTERGENIC
SBS	Chr11	20206281	T-C	Hetero	INTERGENIC
SBS	Chr11	27701472	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g226200
SBS	Chr12	2355067	G-T	Homo	INTERGENIC
SBS	Chr12	3830643	G-C	Homo	INTERGENIC
SBS	Chr12	21354335	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	82182	82184	2
Deletion	Chr12	472001	526000	53999	8
Deletion	Chr4	663869	663870	1	OsKitaake04g005300
Deletion	Chr7	1291353	1291358	5
Deletion	Chr12	1523001	1600000	76999	14
Deletion	Chr11	3563691	3563692	1
Deletion	Chr8	3617893	3617894	1
Deletion	Chr8	4889806	4890174	368
Deletion	Chr4	5135079	5135098	19
Deletion	Chr1	5717698	5717701	3
Deletion	Chr10	8552030	8552034	4
Deletion	Chr3	10747220	10747222	2
Deletion	Chr8	11490036	11490047	11
Deletion	Chr8	13202001	13218000	15999
Deletion	Chr11	19047907	19047915	8
Deletion	Chr3	20043928	20044236	308
Deletion	Chr1	23003301	23003302	1
Deletion	Chr2	24580603	24580609	6
Deletion	Chr5	25137493	25137496	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4064521	4089722	OsKitaake06g057500
Inversion	Chr6	4068347	4089725	OsKitaake06g057500
Inversion	Chr3	8176781	8574860	2
Inversion	Chr3	8577057	8597087	OsKitaake03g118100
Inversion	Chr2	14236064	15088642
Inversion	Chr2	14304493	15088601
Inversion	Chr4	36121726	36173884	OsKitaake04g311400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes