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Mutant Information

Mutant Name	FN1666-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1666-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 42056853 C-T Hetero INTRON
SBS Chr2 21615558 C-G Homo INTERGENIC
SBS Chr3 5775489 T-G Hetero INTERGENIC
SBS Chr3 9446165 A-G Hetero INTERGENIC
SBS Chr3 9898653 C-A Hetero INTERGENIC
SBS Chr3 11998950 A-T Hetero INTRON
SBS Chr3 23105834 C-T Hetero INTERGENIC
SBS Chr3 34575763 C-T Hetero INTERGENIC
SBS Chr4 13501097 G-A Hetero INTERGENIC
SBS Chr4 27364485 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g199400
SBS Chr4 27795723 T-A Hetero INTERGENIC
SBS Chr4 28810516 A-G Hetero INTERGENIC
SBS Chr4 28862365 A-G Hetero UTR_5_PRIME
SBS Chr5 22876095 A-G Hetero INTRON
SBS Chr7 12292647 A-G Hetero INTERGENIC
SBS Chr8 1607204 A-T Hetero INTERGENIC
SBS Chr8 5811300 G-A Hetero INTERGENIC
SBS Chr8 9119497 C-G Hetero INTERGENIC
SBS Chr8 11725902 G-A Hetero INTERGENIC
SBS Chr8 17882899 C-T Hetero INTERGENIC
SBS Chr8 20593418 G-T Hetero INTERGENIC
SBS Chr11 7365335 T-C Hetero INTERGENIC
SBS Chr11 7800958 C-T Hetero INTERGENIC
SBS Chr11 17351037 G-A Homo INTERGENIC
SBS Chr11 19531732 G-A Hetero INTERGENIC
SBS Chr11 20739406 T-A Hetero INTRON
SBS Chr12 5621193 A-T Homo INTERGENIC
SBS Chr12 9120358 T-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 612751 612757 6
Deletion Chr8 8664786 8664788 2
Deletion Chr5 8721281 8721286 5
Deletion Chr3 9913891 9913897 6 OsKitaake03g135500
Deletion Chr1 11766322 11766329 7 OsKitaake01g145200
Deletion Chr7 14252011 14252012 1
Deletion Chr5 15447051 15447059 8
Deletion Chr5 18516921 18516927 6
Deletion Chr9 18864503 18864510 7
Deletion Chr6 25705507 25705523 16
Deletion Chr7 28726241 28726247 6 OsKitaake07g274000
Deletion Chr1 37466102 37466104 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 17278757 17278760 2
Insertion Chr2 29292738 29292741 2 OsKitaake02g294500
Insertion Chr7 12006316 12006318 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 11996187 12920575 2
Inversion Chr3 11996195 12920587 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	42056853	C-T	Hetero	INTRON
SBS	Chr2	21615558	C-G	Homo	INTERGENIC
SBS	Chr3	5775489	T-G	Hetero	INTERGENIC
SBS	Chr3	9446165	A-G	Hetero	INTERGENIC
SBS	Chr3	9898653	C-A	Hetero	INTERGENIC
SBS	Chr3	11998950	A-T	Hetero	INTRON
SBS	Chr3	23105834	C-T	Hetero	INTERGENIC
SBS	Chr3	34575763	C-T	Hetero	INTERGENIC
SBS	Chr4	13501097	G-A	Hetero	INTERGENIC
SBS	Chr4	27364485	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g199400
SBS	Chr4	27795723	T-A	Hetero	INTERGENIC
SBS	Chr4	28810516	A-G	Hetero	INTERGENIC
SBS	Chr4	28862365	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	22876095	A-G	Hetero	INTRON
SBS	Chr7	12292647	A-G	Hetero	INTERGENIC
SBS	Chr8	1607204	A-T	Hetero	INTERGENIC
SBS	Chr8	5811300	G-A	Hetero	INTERGENIC
SBS	Chr8	9119497	C-G	Hetero	INTERGENIC
SBS	Chr8	11725902	G-A	Hetero	INTERGENIC
SBS	Chr8	17882899	C-T	Hetero	INTERGENIC
SBS	Chr8	20593418	G-T	Hetero	INTERGENIC
SBS	Chr11	7365335	T-C	Hetero	INTERGENIC
SBS	Chr11	7800958	C-T	Hetero	INTERGENIC
SBS	Chr11	17351037	G-A	Homo	INTERGENIC
SBS	Chr11	19531732	G-A	Hetero	INTERGENIC
SBS	Chr11	20739406	T-A	Hetero	INTRON
SBS	Chr12	5621193	A-T	Homo	INTERGENIC
SBS	Chr12	9120358	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	612751	612757	6
Deletion	Chr8	8664786	8664788	2
Deletion	Chr5	8721281	8721286	5
Deletion	Chr3	9913891	9913897	6	OsKitaake03g135500
Deletion	Chr1	11766322	11766329	7	OsKitaake01g145200
Deletion	Chr7	14252011	14252012	1
Deletion	Chr5	15447051	15447059	8
Deletion	Chr5	18516921	18516927	6
Deletion	Chr9	18864503	18864510	7
Deletion	Chr6	25705507	25705523	16
Deletion	Chr7	28726241	28726247	6	OsKitaake07g274000
Deletion	Chr1	37466102	37466104	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11996187	12920575	2
Inversion	Chr3	11996195	12920587	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes