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Mutant Information

Mutant Name	FN1667-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1667-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3057985 A-G Hetero INTERGENIC
SBS Chr1 22394394 A-T Homo INTERGENIC
SBS Chr3 25514865 A-T Hetero INTERGENIC
SBS Chr3 32855389 T-A Hetero INTERGENIC
SBS Chr4 8004736 G-A Hetero INTERGENIC
SBS Chr4 36796527 G-C Homo INTRON
SBS Chr6 490783 T-C Homo NON_SYNONYMOUS_CODING OsKitaake06g004200
SBS Chr6 650785 C-T Homo INTERGENIC
SBS Chr6 2958946 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g040700
SBS Chr6 3705286 A-G Homo INTERGENIC
SBS Chr6 6447325 G-A Homo INTERGENIC
SBS Chr6 7053948 G-A Homo INTERGENIC
SBS Chr6 28889597 T-A Hetero INTERGENIC
SBS Chr6 28889598 C-A Hetero INTERGENIC
SBS Chr7 809916 T-A Hetero INTERGENIC
SBS Chr8 26315656 T-C Homo INTERGENIC
SBS Chr8 26576928 A-T Homo INTERGENIC
SBS Chr9 3123835 C-T Homo INTERGENIC
SBS Chr9 6502253 A-T Homo INTERGENIC
SBS Chr9 8366738 T-C Homo INTERGENIC
SBS Chr9 13152516 C-T Homo INTERGENIC
SBS Chr10 6363331 G-A Homo INTERGENIC
SBS Chr10 13118598 G-A Homo INTERGENIC
SBS Chr11 19227221 T-C Homo SPLICE_SITE_REGION
SBS Chr11 22121558 C-G Hetero INTERGENIC
SBS Chr12 7697350 C-T Hetero INTRON
SBS Chr12 10096148 G-A Hetero INTRON
SBS Chr12 10096157 C-A Hetero INTRON
SBS Chr12 11632660 G-T Hetero INTERGENIC
SBS Chr12 11632661 T-A Hetero INTERGENIC
SBS Chr12 17854362 T-G Hetero INTERGENIC
SBS Chr12 17854363 G-A Hetero INTERGENIC
SBS Chr12 19781609 T-G Hetero INTERGENIC
SBS Chr12 22294959 A-C Hetero INTERGENIC
SBS Chr12 23305056 T-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 362302 362305 3
Deletion Chr6 2700294 2700298 4
Deletion Chr12 8001942 8001953 11
Deletion Chr9 8134901 8134905 4
Deletion Chr8 10806835 10806909 74
Deletion Chr1 18295210 18295213 3
Deletion Chr10 18343633 18343641 8
Deletion Chr9 22163103 22163105 2
Deletion Chr3 23241427 23241429 2
Deletion Chr1 23345090 23345092 2
Deletion Chr1 26180548 26180555 7
Deletion Chr3 28493707 28493713 6
Deletion Chr3 34290227 34290231 4 OsKitaake03g371400
Deletion Chr1 43985976 43985978 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24734285 24734288 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 3950061 4303543 OsKitaake01g053300
Inversion Chr1 3950063 4303551 OsKitaake01g053300
Inversion Chr5 4541965 4632334
Inversion Chr12 9818709 10112867
Inversion Chr12 9819247 9989220

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 9819247 Chr9 19988141
Translocation Chr12 9989220 Chr9 19988437
Translocation Chr8 12412916 Chr6 16062676 2
Translocation Chr8 12412919 Chr6 16066513 OsKitaake08g106700
Translocation Chr6 16058225 Chr1 34895918
Translocation Chr6 16062671 Chr1 34895920 OsKitaake06g154500
Translocation Chr9 19988021 Chr6 29125193 OsKitaake06g268800
Translocation Chr9 19988133 Chr6 29125203 OsKitaake06g268800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3057985	A-G	Hetero	INTERGENIC
SBS	Chr1	22394394	A-T	Homo	INTERGENIC
SBS	Chr3	25514865	A-T	Hetero	INTERGENIC
SBS	Chr3	32855389	T-A	Hetero	INTERGENIC
SBS	Chr4	8004736	G-A	Hetero	INTERGENIC
SBS	Chr4	36796527	G-C	Homo	INTRON
SBS	Chr6	490783	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g004200
SBS	Chr6	650785	C-T	Homo	INTERGENIC
SBS	Chr6	2958946	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g040700
SBS	Chr6	3705286	A-G	Homo	INTERGENIC
SBS	Chr6	6447325	G-A	Homo	INTERGENIC
SBS	Chr6	7053948	G-A	Homo	INTERGENIC
SBS	Chr6	28889597	T-A	Hetero	INTERGENIC
SBS	Chr6	28889598	C-A	Hetero	INTERGENIC
SBS	Chr7	809916	T-A	Hetero	INTERGENIC
SBS	Chr8	26315656	T-C	Homo	INTERGENIC
SBS	Chr8	26576928	A-T	Homo	INTERGENIC
SBS	Chr9	3123835	C-T	Homo	INTERGENIC
SBS	Chr9	6502253	A-T	Homo	INTERGENIC
SBS	Chr9	8366738	T-C	Homo	INTERGENIC
SBS	Chr9	13152516	C-T	Homo	INTERGENIC
SBS	Chr10	6363331	G-A	Homo	INTERGENIC
SBS	Chr10	13118598	G-A	Homo	INTERGENIC
SBS	Chr11	19227221	T-C	Homo	SPLICE_SITE_REGION
SBS	Chr11	22121558	C-G	Hetero	INTERGENIC
SBS	Chr12	7697350	C-T	Hetero	INTRON
SBS	Chr12	10096148	G-A	Hetero	INTRON
SBS	Chr12	10096157	C-A	Hetero	INTRON
SBS	Chr12	11632660	G-T	Hetero	INTERGENIC
SBS	Chr12	11632661	T-A	Hetero	INTERGENIC
SBS	Chr12	17854362	T-G	Hetero	INTERGENIC
SBS	Chr12	17854363	G-A	Hetero	INTERGENIC
SBS	Chr12	19781609	T-G	Hetero	INTERGENIC
SBS	Chr12	22294959	A-C	Hetero	INTERGENIC
SBS	Chr12	23305056	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	362302	362305	3
Deletion	Chr6	2700294	2700298	4
Deletion	Chr12	8001942	8001953	11
Deletion	Chr9	8134901	8134905	4
Deletion	Chr8	10806835	10806909	74
Deletion	Chr1	18295210	18295213	3
Deletion	Chr10	18343633	18343641	8
Deletion	Chr9	22163103	22163105	2
Deletion	Chr3	23241427	23241429	2
Deletion	Chr1	23345090	23345092	2
Deletion	Chr1	26180548	26180555	7
Deletion	Chr3	28493707	28493713	6
Deletion	Chr3	34290227	34290231	4	OsKitaake03g371400
Deletion	Chr1	43985976	43985978	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3950061	4303543	OsKitaake01g053300
Inversion	Chr1	3950063	4303551	OsKitaake01g053300
Inversion	Chr5	4541965	4632334
Inversion	Chr12	9818709	10112867
Inversion	Chr12	9819247	9989220

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes