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Mutant Information

Mutant Name	FN1668-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1668-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1109895 G-A Hetero INTERGENIC
SBS Chr1 19936840 G-A Homo INTERGENIC
SBS Chr1 23040139 C-T Homo INTRON
SBS Chr1 23207385 C-T Hetero INTERGENIC
SBS Chr1 34846438 G-A Hetero INTERGENIC
SBS Chr1 34938554 A-C Hetero INTERGENIC
SBS Chr2 364496 T-A Hetero INTERGENIC
SBS Chr2 13984225 G-T Hetero INTERGENIC
SBS Chr2 16969355 G-A Hetero INTERGENIC
SBS Chr2 32212215 T-A Homo UTR_3_PRIME
SBS Chr3 5704927 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g080900
SBS Chr3 14140621 A-G Homo INTERGENIC
SBS Chr3 27016326 C-G Hetero INTERGENIC
SBS Chr3 30691683 G-A Hetero INTRON
SBS Chr4 15375009 A-G Hetero INTERGENIC
SBS Chr4 35546520 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g303000
SBS Chr5 7870425 A-T Hetero INTERGENIC
SBS Chr5 12208052 C-A Hetero INTERGENIC
SBS Chr5 15739475 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g121200
SBS Chr6 3775461 T-A Homo INTERGENIC
SBS Chr7 8011949 C-T Homo INTERGENIC
SBS Chr7 22974350 G-T Hetero INTERGENIC
SBS Chr8 1981743 C-A Homo INTRON
SBS Chr9 16350568 C-T Hetero INTERGENIC
SBS Chr9 19630156 C-T Hetero INTERGENIC
SBS Chr10 6340771 T-G Hetero INTERGENIC
SBS Chr10 8737571 C-A Hetero INTERGENIC
SBS Chr11 4373958 A-G Homo INTERGENIC
SBS Chr11 17750165 G-A Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2253712 2253716 4
Deletion Chr11 2609001 2782000 172999 19
Deletion Chr11 4377470 4377473 3
Deletion Chr2 4587578 4587580 2
Deletion Chr9 5376539 5376553 14 OsKitaake09g030800
Deletion Chr8 7218440 7218444 4 OsKitaake08g069614
Deletion Chr10 9983862 9983863 1
Deletion Chr1 10105472 10105480 8 OsKitaake01g127600
Deletion Chr11 10323429 10323430 1
Deletion Chr12 15382472 15382479 7
Deletion Chr1 18042962 18042963 1
Deletion Chr10 18668596 18668600 4
Deletion Chr9 19595196 19595200 4
Deletion Chr2 20880712 20880718 6
Deletion Chr11 22135547 22135564 17
Deletion Chr2 24470272 24470279 7
Deletion Chr1 24617768 24617783 15
Deletion Chr1 24748443 24748456 13 OsKitaake01g238732
Deletion Chr6 28814444 28814461 17
Deletion Chr6 29199060 29199061 1
Deletion Chr6 30107615 30107625 10

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 21459879 21459884 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 27383033 27582272 OsKitaake05g251600
Inversion Chr5 27383089 27582281 OsKitaake05g251600
Inversion Chr3 31797875 32023732 OsKitaake03g339100
Inversion Chr3 31797922 32023733 OsKitaake03g339100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 9265218 Chr2 32210904 OsKitaake03g126500
Translocation Chr3 9265224 Chr2 32210961 OsKitaake03g126500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1109895	G-A	Hetero	INTERGENIC
SBS	Chr1	19936840	G-A	Homo	INTERGENIC
SBS	Chr1	23040139	C-T	Homo	INTRON
SBS	Chr1	23207385	C-T	Hetero	INTERGENIC
SBS	Chr1	34846438	G-A	Hetero	INTERGENIC
SBS	Chr1	34938554	A-C	Hetero	INTERGENIC
SBS	Chr2	364496	T-A	Hetero	INTERGENIC
SBS	Chr2	13984225	G-T	Hetero	INTERGENIC
SBS	Chr2	16969355	G-A	Hetero	INTERGENIC
SBS	Chr2	32212215	T-A	Homo	UTR_3_PRIME
SBS	Chr3	5704927	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g080900
SBS	Chr3	14140621	A-G	Homo	INTERGENIC
SBS	Chr3	27016326	C-G	Hetero	INTERGENIC
SBS	Chr3	30691683	G-A	Hetero	INTRON
SBS	Chr4	15375009	A-G	Hetero	INTERGENIC
SBS	Chr4	35546520	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g303000
SBS	Chr5	7870425	A-T	Hetero	INTERGENIC
SBS	Chr5	12208052	C-A	Hetero	INTERGENIC
SBS	Chr5	15739475	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g121200
SBS	Chr6	3775461	T-A	Homo	INTERGENIC
SBS	Chr7	8011949	C-T	Homo	INTERGENIC
SBS	Chr7	22974350	G-T	Hetero	INTERGENIC
SBS	Chr8	1981743	C-A	Homo	INTRON
SBS	Chr9	16350568	C-T	Hetero	INTERGENIC
SBS	Chr9	19630156	C-T	Hetero	INTERGENIC
SBS	Chr10	6340771	T-G	Hetero	INTERGENIC
SBS	Chr10	8737571	C-A	Hetero	INTERGENIC
SBS	Chr11	4373958	A-G	Homo	INTERGENIC
SBS	Chr11	17750165	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2253712	2253716	4
Deletion	Chr11	2609001	2782000	172999	19
Deletion	Chr11	4377470	4377473	3
Deletion	Chr2	4587578	4587580	2
Deletion	Chr9	5376539	5376553	14	OsKitaake09g030800
Deletion	Chr8	7218440	7218444	4	OsKitaake08g069614
Deletion	Chr10	9983862	9983863	1
Deletion	Chr1	10105472	10105480	8	OsKitaake01g127600
Deletion	Chr11	10323429	10323430	1
Deletion	Chr12	15382472	15382479	7
Deletion	Chr1	18042962	18042963	1
Deletion	Chr10	18668596	18668600	4
Deletion	Chr9	19595196	19595200	4
Deletion	Chr2	20880712	20880718	6
Deletion	Chr11	22135547	22135564	17
Deletion	Chr2	24470272	24470279	7
Deletion	Chr1	24617768	24617783	15
Deletion	Chr1	24748443	24748456	13	OsKitaake01g238732
Deletion	Chr6	28814444	28814461	17
Deletion	Chr6	29199060	29199061	1
Deletion	Chr6	30107615	30107625	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	27383033	27582272	OsKitaake05g251600
Inversion	Chr5	27383089	27582281	OsKitaake05g251600
Inversion	Chr3	31797875	32023732	OsKitaake03g339100
Inversion	Chr3	31797922	32023733	OsKitaake03g339100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes