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| Mutant Information |
|---|
| Mutant Name | FN1669-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1669-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8214758 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 11252705 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 28782356 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 2713533 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 15568108 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 7734605 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 10054512 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 19785004 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 36412378 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7876928 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 8072159 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34097120 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34997322 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 27552642 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18734809 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 25029908 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 7492012 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 23682621 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 11204787 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 16091770 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 11361241 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 13933662 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 23818545 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 22476135 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 22990641 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24000101 | G-C | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 4007570 | 4007571 | 1 | |
| Deletion | Chr9 | 4423985 | 4423991 | 6 | OsKitaake09g024850 |
| Deletion | Chr4 | 5337001 | 5455000 | 117999 | 7 |
| Deletion | Chr8 | 16103557 | 16103570 | 13 | |
| Deletion | Chr10 | 16263342 | 16263358 | 16 | |
| Deletion | Chr9 | 17033633 | 17033634 | 1 | |
| Deletion | Chr4 | 19429001 | 19449000 | 19999 | OsKitaake04g099601 |
| Deletion | Chr1 | 21744933 | 21744934 | 1 | |
| Deletion | Chr8 | 22031184 | 22031186 | 2 | OsKitaake08g167200 |
| Deletion | Chr3 | 22053342 | 22053344 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 2862409 | 2862412 | 2 | |
| Insertion | Chr8 | 22301792 | 22301796 | 3 | |
| Insertion | Chr4 | 10454656 | 10454658 | 1 |