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Mutant Information

Mutant Name	FN1670-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1670-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13332874 G-C Hetero INTERGENIC
SBS Chr1 20759142 T-C Homo INTERGENIC
SBS Chr1 21396581 C-T Homo INTERGENIC
SBS Chr1 25862360 A-T Hetero INTERGENIC
SBS Chr2 5811121 G-A Hetero INTRON
SBS Chr2 35919738 A-G Hetero INTERGENIC
SBS Chr3 5526020 G-A Homo SYNONYMOUS_CODING
SBS Chr3 7424825 A-C Homo INTERGENIC
SBS Chr3 20328177 C-T Homo INTERGENIC
SBS Chr3 35087954 A-G Homo SPLICE_SITE_REGION
SBS Chr4 1368878 C-T Homo INTERGENIC
SBS Chr4 2904598 G-A Homo INTERGENIC
SBS Chr4 6888061 A-T Homo INTERGENIC
SBS Chr4 23185367 G-A Homo INTERGENIC
SBS Chr4 32415557 C-T Hetero INTERGENIC
SBS Chr6 10275654 A-G Hetero INTERGENIC
SBS Chr6 16970229 G-T Hetero INTERGENIC
SBS Chr6 18519168 C-T Hetero INTERGENIC
SBS Chr8 1796473 G-A Homo INTERGENIC
SBS Chr8 12020004 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g105100
SBS Chr8 15655132 G-A Homo INTERGENIC
SBS Chr9 15481219 C-T Hetero INTERGENIC
SBS Chr10 12941568 G-A Hetero INTERGENIC
SBS Chr10 13138926 A-T Hetero INTERGENIC
SBS Chr11 14875139 C-A Homo INTERGENIC
SBS Chr11 26453898 G-T Hetero INTERGENIC
SBS Chr12 2430943 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g036950
SBS Chr12 9533720 G-A Hetero INTERGENIC
SBS Chr12 24750591 A-G Hetero INTERGENIC
SBS Chr12 25052212 G-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3075001 3086000 10999 OsKitaake10g025100
Deletion Chr9 5114288 5114434 146
Deletion Chr4 7035514 7035515 1
Deletion Chr3 7362119 7362122 3
Deletion Chr8 7948763 7948764 1
Deletion Chr4 10380782 10380786 4
Deletion Chr5 17167630 17167653 23
Deletion Chr1 20061599 20061607 8
Deletion Chr5 22015001 22029000 13999 3
Deletion Chr1 40965562 40965567 5

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 10242391 10242394 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 16479638 Chr3 35267544 OsKitaake03g386300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13332874	G-C	Hetero	INTERGENIC
SBS	Chr1	20759142	T-C	Homo	INTERGENIC
SBS	Chr1	21396581	C-T	Homo	INTERGENIC
SBS	Chr1	25862360	A-T	Hetero	INTERGENIC
SBS	Chr2	5811121	G-A	Hetero	INTRON
SBS	Chr2	35919738	A-G	Hetero	INTERGENIC
SBS	Chr3	5526020	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	7424825	A-C	Homo	INTERGENIC
SBS	Chr3	20328177	C-T	Homo	INTERGENIC
SBS	Chr3	35087954	A-G	Homo	SPLICE_SITE_REGION
SBS	Chr4	1368878	C-T	Homo	INTERGENIC
SBS	Chr4	2904598	G-A	Homo	INTERGENIC
SBS	Chr4	6888061	A-T	Homo	INTERGENIC
SBS	Chr4	23185367	G-A	Homo	INTERGENIC
SBS	Chr4	32415557	C-T	Hetero	INTERGENIC
SBS	Chr6	10275654	A-G	Hetero	INTERGENIC
SBS	Chr6	16970229	G-T	Hetero	INTERGENIC
SBS	Chr6	18519168	C-T	Hetero	INTERGENIC
SBS	Chr8	1796473	G-A	Homo	INTERGENIC
SBS	Chr8	12020004	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g105100
SBS	Chr8	15655132	G-A	Homo	INTERGENIC
SBS	Chr9	15481219	C-T	Hetero	INTERGENIC
SBS	Chr10	12941568	G-A	Hetero	INTERGENIC
SBS	Chr10	13138926	A-T	Hetero	INTERGENIC
SBS	Chr11	14875139	C-A	Homo	INTERGENIC
SBS	Chr11	26453898	G-T	Hetero	INTERGENIC
SBS	Chr12	2430943	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g036950
SBS	Chr12	9533720	G-A	Hetero	INTERGENIC
SBS	Chr12	24750591	A-G	Hetero	INTERGENIC
SBS	Chr12	25052212	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3075001	3086000	10999	OsKitaake10g025100
Deletion	Chr9	5114288	5114434	146
Deletion	Chr4	7035514	7035515	1
Deletion	Chr3	7362119	7362122	3
Deletion	Chr8	7948763	7948764	1
Deletion	Chr4	10380782	10380786	4
Deletion	Chr5	17167630	17167653	23
Deletion	Chr1	20061599	20061607	8
Deletion	Chr5	22015001	22029000	13999	3
Deletion	Chr1	40965562	40965567	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	16479638	Chr3	35267544	OsKitaake03g386300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes