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Mutant Information

Mutant Name	FN1673-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1673-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4797393 A-G Homo INTERGENIC
SBS Chr1 21309446 C-G Hetero INTERGENIC
SBS Chr1 29625684 G-A Hetero INTERGENIC
SBS Chr1 42957309 C-A Homo INTERGENIC
SBS Chr2 3509345 C-T Homo INTERGENIC
SBS Chr2 7841079 C-T Homo INTRON
SBS Chr2 31487342 G-A Hetero INTERGENIC
SBS Chr3 11894494 T-C Homo INTERGENIC
SBS Chr3 28718851 G-A Hetero INTERGENIC
SBS Chr3 31772866 A-G Hetero INTRON
SBS Chr4 5270225 G-C Hetero INTERGENIC
SBS Chr4 5601000 C-T Hetero INTERGENIC
SBS Chr4 30585331 A-T Hetero INTERGENIC
SBS Chr4 35233855 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g297100
SBS Chr5 1932718 G-A Homo SYNONYMOUS_CODING
SBS Chr5 5059844 C-T Hetero INTERGENIC
SBS Chr5 27636357 T-A Hetero INTRON
SBS Chr7 5006035 G-A Hetero INTERGENIC
SBS Chr7 9761062 A-T Hetero INTERGENIC
SBS Chr7 28154045 G-A Homo INTERGENIC
SBS Chr8 19243201 G-T Homo INTERGENIC
SBS Chr8 19412035 C-T Hetero INTERGENIC
SBS Chr9 3724571 T-A Hetero INTERGENIC
SBS Chr9 9132493 T-C Hetero INTERGENIC
SBS Chr10 6707461 T-C Hetero INTRON
SBS Chr10 7587541 C-T Hetero INTERGENIC
SBS Chr10 10007158 A-G Hetero INTERGENIC
SBS Chr10 10145827 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g058900
SBS Chr10 15127983 T-A Hetero INTERGENIC
SBS Chr11 4635354 A-C Homo INTRON
SBS Chr11 22765757 A-T Hetero INTERGENIC
SBS Chr11 23410935 C-T Hetero INTERGENIC
SBS Chr11 26109593 C-T Hetero INTERGENIC
SBS Chr12 9437885 G-C Homo INTERGENIC
SBS Chr12 11764898 T-A Hetero INTERGENIC
SBS Chr12 15063458 G-A Hetero INTERGENIC
SBS Chr12 19601244 G-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 156419 156420 1
Deletion Chr8 670164 670165 1
Deletion Chr9 3331455 3331456 1
Deletion Chr5 4447380 4447381 1 OsKitaake05g051700
Deletion Chr6 6179581 6179589 8
Deletion Chr6 11627862 11627863 1
Deletion Chr3 13844563 13844566 3 OsKitaake03g182800
Deletion Chr12 14913100 14913102 2
Deletion Chr11 17250566 17250567 1
Deletion Chr3 18434879 18434889 10
Deletion Chr3 26598093 26598101 8
Deletion Chr8 27686473 27686482 9
Deletion Chr7 29067770 29067771 1
Deletion Chr6 29587613 29587614 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16357158 16357161 2
Insertion Chr4 16499886 16499888 1 OsKitaake04g080300

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 23367854 23712401 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2802254 Chr1 2160893

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4797393	A-G	Homo	INTERGENIC
SBS	Chr1	21309446	C-G	Hetero	INTERGENIC
SBS	Chr1	29625684	G-A	Hetero	INTERGENIC
SBS	Chr1	42957309	C-A	Homo	INTERGENIC
SBS	Chr2	3509345	C-T	Homo	INTERGENIC
SBS	Chr2	7841079	C-T	Homo	INTRON
SBS	Chr2	31487342	G-A	Hetero	INTERGENIC
SBS	Chr3	11894494	T-C	Homo	INTERGENIC
SBS	Chr3	28718851	G-A	Hetero	INTERGENIC
SBS	Chr3	31772866	A-G	Hetero	INTRON
SBS	Chr4	5270225	G-C	Hetero	INTERGENIC
SBS	Chr4	5601000	C-T	Hetero	INTERGENIC
SBS	Chr4	30585331	A-T	Hetero	INTERGENIC
SBS	Chr4	35233855	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g297100
SBS	Chr5	1932718	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	5059844	C-T	Hetero	INTERGENIC
SBS	Chr5	27636357	T-A	Hetero	INTRON
SBS	Chr7	5006035	G-A	Hetero	INTERGENIC
SBS	Chr7	9761062	A-T	Hetero	INTERGENIC
SBS	Chr7	28154045	G-A	Homo	INTERGENIC
SBS	Chr8	19243201	G-T	Homo	INTERGENIC
SBS	Chr8	19412035	C-T	Hetero	INTERGENIC
SBS	Chr9	3724571	T-A	Hetero	INTERGENIC
SBS	Chr9	9132493	T-C	Hetero	INTERGENIC
SBS	Chr10	6707461	T-C	Hetero	INTRON
SBS	Chr10	7587541	C-T	Hetero	INTERGENIC
SBS	Chr10	10007158	A-G	Hetero	INTERGENIC
SBS	Chr10	10145827	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g058900
SBS	Chr10	15127983	T-A	Hetero	INTERGENIC
SBS	Chr11	4635354	A-C	Homo	INTRON
SBS	Chr11	22765757	A-T	Hetero	INTERGENIC
SBS	Chr11	23410935	C-T	Hetero	INTERGENIC
SBS	Chr11	26109593	C-T	Hetero	INTERGENIC
SBS	Chr12	9437885	G-C	Homo	INTERGENIC
SBS	Chr12	11764898	T-A	Hetero	INTERGENIC
SBS	Chr12	15063458	G-A	Hetero	INTERGENIC
SBS	Chr12	19601244	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	156419	156420	1
Deletion	Chr8	670164	670165	1
Deletion	Chr9	3331455	3331456	1
Deletion	Chr5	4447380	4447381	1	OsKitaake05g051700
Deletion	Chr6	6179581	6179589	8
Deletion	Chr6	11627862	11627863	1
Deletion	Chr3	13844563	13844566	3	OsKitaake03g182800
Deletion	Chr12	14913100	14913102	2
Deletion	Chr11	17250566	17250567	1
Deletion	Chr3	18434879	18434889	10
Deletion	Chr3	26598093	26598101	8
Deletion	Chr8	27686473	27686482	9
Deletion	Chr7	29067770	29067771	1
Deletion	Chr6	29587613	29587614	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	23367854	23712401	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes