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| Mutant Information |
|---|
| Mutant Name | FN1674-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1674-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7859341 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 40599733 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 13007019 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14817822 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 36297367 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 16755338 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 17722220 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1961429 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 11877404 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 24891837 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 36217805 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g313300 |
| SBS | Chr7 | 6008343 | A-G | Homo | INTRON | |
| SBS | Chr7 | 24629167 | A-C | Hetero | INTRON | |
| SBS | Chr8 | 1238113 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1238114 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2981883 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 4365409 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8496531 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14336729 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 52244 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 5270060 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9586687 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 17256601 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 28337974 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 6100983 | G-T | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1970449 | 1970450 | 1 | |
| Deletion | Chr9 | 8804470 | 8804480 | 10 | |
| Deletion | Chr3 | 19897255 | 19897256 | 1 | |
| Deletion | Chr3 | 27376758 | 27376759 | 1 | OsKitaake03g282400 |
| Deletion | Chr11 | 28636655 | 28636660 | 5 | |
| Deletion | Chr2 | 32776079 | 32776080 | 1 | |
| Deletion | Chr4 | 34623001 | 34745000 | 121999 | 12 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 34296192 | 34296195 | 2 | |
| Insertion | Chr8 | 469848 | 469851 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 21999434 | 22259304 | 2 |
| Inversion | Chr7 | 21999443 | 22259310 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 7429797 | Chr1 | 4900580 | |
| Translocation | Chr8 | 7431001 | Chr1 | 4900566 |