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Mutant Information

Mutant Name	FN1675-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1675-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (20% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2534873 C-T Homo INTERGENIC
SBS Chr1 11288978 T-C Homo INTERGENIC
SBS Chr1 13621382 G-A Hetero INTERGENIC
SBS Chr2 15998060 G-T Homo INTERGENIC
SBS Chr2 20411770 G-A Homo INTERGENIC
SBS Chr2 29690387 C-T Homo INTERGENIC
SBS Chr2 33015923 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g339500
SBS Chr3 6981927 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g098200
SBS Chr4 4878699 G-T Homo INTERGENIC
SBS Chr4 4878700 C-T Homo INTERGENIC
SBS Chr4 23912271 C-T Homo INTERGENIC
SBS Chr4 32615887 T-C Hetero INTERGENIC
SBS Chr5 2862288 A-G Homo INTERGENIC
SBS Chr6 2394312 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g031200
SBS Chr6 9648513 G-A Hetero INTERGENIC
SBS Chr6 9648514 C-T Hetero INTERGENIC
SBS Chr6 19177306 C-T Hetero UTR_3_PRIME
SBS Chr6 19477644 G-A Hetero INTERGENIC
SBS Chr7 14855415 T-A Hetero INTERGENIC
SBS Chr8 24043993 G-A Hetero INTERGENIC
SBS Chr9 5269636 T-G Hetero INTERGENIC
SBS Chr10 1101401 T-C Hetero INTRON
SBS Chr10 8936254 C-G Hetero INTERGENIC
SBS Chr10 19054826 G-A Hetero INTERGENIC
SBS Chr11 8529990 C-G Hetero INTERGENIC
SBS Chr11 10700032 T-A Hetero INTERGENIC
SBS Chr11 18851055 G-T Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3176924 3176926 2
Deletion Chr12 11688132 11688297 165
Deletion Chr6 15102001 15234000 131999 5
Deletion Chr5 17779001 17792000 12999 OsKitaake05g137000
Deletion Chr8 18482974 18482976 2
Deletion Chr6 19188001 19253000 64999 6
Deletion Chr3 19857001 19893000 35999
Deletion Chr5 26154001 26179000 24999 2
Deletion Chr1 26603867 26603869 2 OsKitaake01g258550
Deletion Chr1 26928699 26928701 2
Deletion Chr3 33857356 33857357 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11280329 11280331 1
Insertion Chr1 15278059 15278062 2
Insertion Chr5 9776708 9776711 2
Insertion Chr9 14860235 14860238 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 7450841 7679014 OsKitaake08g070900
Inversion Chr5 17792200 18191769 OsKitaake05g141300
Inversion Chr6 19248614 19622853
Inversion Chr6 19249110 19467242 OsKitaake06g174903
Inversion Chr3 33357655 33518424 OsKitaake03g359000
Inversion Chr3 33357673 33518429 OsKitaake03g359000

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1875002 Chr4 26261574 OsKitaake04g186900
Translocation Chr11 1875344 Chr4 26261573 OsKitaake04g186900
Translocation Chr7 7197486 Chr5 26217399
Translocation Chr9 8636479 Chr7 28458371 OsKitaake07g270600
Translocation Chr9 8636491 Chr7 28457634 OsKitaake07g270500
Translocation Chr7 23306198 Chr5 26217399 OsKitaake07g203000
Translocation Chr7 23306224 Chr5 26217597 OsKitaake07g203000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2534873	C-T	Homo	INTERGENIC
SBS	Chr1	11288978	T-C	Homo	INTERGENIC
SBS	Chr1	13621382	G-A	Hetero	INTERGENIC
SBS	Chr2	15998060	G-T	Homo	INTERGENIC
SBS	Chr2	20411770	G-A	Homo	INTERGENIC
SBS	Chr2	29690387	C-T	Homo	INTERGENIC
SBS	Chr2	33015923	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g339500
SBS	Chr3	6981927	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g098200
SBS	Chr4	4878699	G-T	Homo	INTERGENIC
SBS	Chr4	4878700	C-T	Homo	INTERGENIC
SBS	Chr4	23912271	C-T	Homo	INTERGENIC
SBS	Chr4	32615887	T-C	Hetero	INTERGENIC
SBS	Chr5	2862288	A-G	Homo	INTERGENIC
SBS	Chr6	2394312	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g031200
SBS	Chr6	9648513	G-A	Hetero	INTERGENIC
SBS	Chr6	9648514	C-T	Hetero	INTERGENIC
SBS	Chr6	19177306	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	19477644	G-A	Hetero	INTERGENIC
SBS	Chr7	14855415	T-A	Hetero	INTERGENIC
SBS	Chr8	24043993	G-A	Hetero	INTERGENIC
SBS	Chr9	5269636	T-G	Hetero	INTERGENIC
SBS	Chr10	1101401	T-C	Hetero	INTRON
SBS	Chr10	8936254	C-G	Hetero	INTERGENIC
SBS	Chr10	19054826	G-A	Hetero	INTERGENIC
SBS	Chr11	8529990	C-G	Hetero	INTERGENIC
SBS	Chr11	10700032	T-A	Hetero	INTERGENIC
SBS	Chr11	18851055	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3176924	3176926	2
Deletion	Chr12	11688132	11688297	165
Deletion	Chr6	15102001	15234000	131999	5
Deletion	Chr5	17779001	17792000	12999	OsKitaake05g137000
Deletion	Chr8	18482974	18482976	2
Deletion	Chr6	19188001	19253000	64999	6
Deletion	Chr3	19857001	19893000	35999
Deletion	Chr5	26154001	26179000	24999	2
Deletion	Chr1	26603867	26603869	2	OsKitaake01g258550
Deletion	Chr1	26928699	26928701	2
Deletion	Chr3	33857356	33857357	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	7450841	7679014	OsKitaake08g070900
Inversion	Chr5	17792200	18191769	OsKitaake05g141300
Inversion	Chr6	19248614	19622853
Inversion	Chr6	19249110	19467242	OsKitaake06g174903
Inversion	Chr3	33357655	33518424	OsKitaake03g359000
Inversion	Chr3	33357673	33518429	OsKitaake03g359000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes