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Mutant Information

Mutant Name	FN1679-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1679-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 188666 G-A Hetero INTERGENIC
SBS Chr1 17417848 A-G Homo INTERGENIC
SBS Chr2 18087400 G-C Hetero INTERGENIC
SBS Chr2 27134743 A-G Hetero INTERGENIC
SBS Chr3 29004080 C-T Hetero INTERGENIC
SBS Chr4 6529647 T-C Homo INTERGENIC
SBS Chr4 12507745 G-A Homo INTERGENIC
SBS Chr4 24516028 C-A Homo INTERGENIC
SBS Chr5 7735864 T-C Homo INTERGENIC
SBS Chr5 12557464 C-A Homo INTERGENIC
SBS Chr5 16048406 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g122900
SBS Chr5 23612774 G-T Homo INTERGENIC
SBS Chr5 29083795 A-T Homo INTERGENIC
SBS Chr6 21278119 T-C Homo INTERGENIC
SBS Chr7 8497778 A-C Homo INTERGENIC
SBS Chr7 13844879 G-C Homo INTERGENIC
SBS Chr7 22706073 T-A Hetero INTERGENIC
SBS Chr7 26502994 G-A Hetero INTERGENIC
SBS Chr7 26503000 C-A Hetero INTERGENIC
SBS Chr7 27627170 G-A Hetero INTERGENIC
SBS Chr8 11167911 T-C Hetero INTERGENIC
SBS Chr8 19115848 C-T Homo INTERGENIC
SBS Chr8 20569825 G-A Hetero INTERGENIC
SBS Chr9 12176057 G-A Hetero INTERGENIC
SBS Chr9 17602207 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g133000
SBS Chr10 3899333 A-T Homo INTERGENIC
SBS Chr10 5058811 T-C Homo INTERGENIC
SBS Chr10 6840560 G-C Homo INTERGENIC
SBS Chr11 16235403 A-C Homo INTERGENIC
SBS Chr11 23690761 G-A Homo INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1683751 1683759 8
Deletion Chr9 3745171 3745174 3
Deletion Chr12 5748248 5748252 4
Deletion Chr1 8402343 8402351 8
Deletion Chr9 10237410 10237412 2
Deletion Chr6 12699809 12699819 10
Deletion Chr4 13770001 13852000 81999 OsKitaake04g066300
Deletion Chr2 14747241 14747243 2
Deletion Chr3 14798645 14798665 20
Deletion Chr2 15278001 15311000 32999 2
Deletion Chr11 16607384 16607394 10
Deletion Chr12 18339424 18339534 110
Deletion Chr9 18543934 18543936 2
Deletion Chr3 18907953 18907960 7
Deletion Chr9 19241612 19241613 1
Deletion Chr6 19255569 19255575 6
Deletion Chr10 19814520 19814526 6
Deletion Chr2 21428727 21428733 6
Deletion Chr11 22939328 22939333 5
Deletion Chr2 23205845 23205941 96
Deletion Chr2 24415563 24415566 3
Deletion Chr3 24454440 24454463 23
Deletion Chr7 26613834 26613850 16
Deletion Chr8 26831034 26831050 16 OsKitaake08g217300
Deletion Chr1 31205001 31216000 10999 3
Deletion Chr1 41063448 41063452 4 OsKitaake01g448100

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 32862288 32862291 2
Insertion Chr3 6885482 6885485 2 OsKitaake03g097400
Insertion Chr3 33929598 33929600 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 14517386 14586531
Inversion Chr2 14517398 14586531

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 13772018 Chr1 31201576 OsKitaake01g312100
Translocation Chr4 13773129 Chr1 31215999 OsKitaake01g312300
Translocation Chr7 17550467 Chr1 31795555

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	188666	G-A	Hetero	INTERGENIC
SBS	Chr1	17417848	A-G	Homo	INTERGENIC
SBS	Chr2	18087400	G-C	Hetero	INTERGENIC
SBS	Chr2	27134743	A-G	Hetero	INTERGENIC
SBS	Chr3	29004080	C-T	Hetero	INTERGENIC
SBS	Chr4	6529647	T-C	Homo	INTERGENIC
SBS	Chr4	12507745	G-A	Homo	INTERGENIC
SBS	Chr4	24516028	C-A	Homo	INTERGENIC
SBS	Chr5	7735864	T-C	Homo	INTERGENIC
SBS	Chr5	12557464	C-A	Homo	INTERGENIC
SBS	Chr5	16048406	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g122900
SBS	Chr5	23612774	G-T	Homo	INTERGENIC
SBS	Chr5	29083795	A-T	Homo	INTERGENIC
SBS	Chr6	21278119	T-C	Homo	INTERGENIC
SBS	Chr7	8497778	A-C	Homo	INTERGENIC
SBS	Chr7	13844879	G-C	Homo	INTERGENIC
SBS	Chr7	22706073	T-A	Hetero	INTERGENIC
SBS	Chr7	26502994	G-A	Hetero	INTERGENIC
SBS	Chr7	26503000	C-A	Hetero	INTERGENIC
SBS	Chr7	27627170	G-A	Hetero	INTERGENIC
SBS	Chr8	11167911	T-C	Hetero	INTERGENIC
SBS	Chr8	19115848	C-T	Homo	INTERGENIC
SBS	Chr8	20569825	G-A	Hetero	INTERGENIC
SBS	Chr9	12176057	G-A	Hetero	INTERGENIC
SBS	Chr9	17602207	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g133000
SBS	Chr10	3899333	A-T	Homo	INTERGENIC
SBS	Chr10	5058811	T-C	Homo	INTERGENIC
SBS	Chr10	6840560	G-C	Homo	INTERGENIC
SBS	Chr11	16235403	A-C	Homo	INTERGENIC
SBS	Chr11	23690761	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1683751	1683759	8
Deletion	Chr9	3745171	3745174	3
Deletion	Chr12	5748248	5748252	4
Deletion	Chr1	8402343	8402351	8
Deletion	Chr9	10237410	10237412	2
Deletion	Chr6	12699809	12699819	10
Deletion	Chr4	13770001	13852000	81999	OsKitaake04g066300
Deletion	Chr2	14747241	14747243	2
Deletion	Chr3	14798645	14798665	20
Deletion	Chr2	15278001	15311000	32999	2
Deletion	Chr11	16607384	16607394	10
Deletion	Chr12	18339424	18339534	110
Deletion	Chr9	18543934	18543936	2
Deletion	Chr3	18907953	18907960	7
Deletion	Chr9	19241612	19241613	1
Deletion	Chr6	19255569	19255575	6
Deletion	Chr10	19814520	19814526	6
Deletion	Chr2	21428727	21428733	6
Deletion	Chr11	22939328	22939333	5
Deletion	Chr2	23205845	23205941	96
Deletion	Chr2	24415563	24415566	3
Deletion	Chr3	24454440	24454463	23
Deletion	Chr7	26613834	26613850	16
Deletion	Chr8	26831034	26831050	16	OsKitaake08g217300
Deletion	Chr1	31205001	31216000	10999	3
Deletion	Chr1	41063448	41063452	4	OsKitaake01g448100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	14517386	14586531
Inversion	Chr2	14517398	14586531

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes