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Mutant Information

Mutant Name	FN1680-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1680-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8873417 T-A Hetero INTERGENIC
SBS Chr1 29041130 C-T Hetero UTR_5_PRIME
SBS Chr1 34876119 C-T Hetero INTERGENIC
SBS Chr1 36673028 G-A Hetero INTERGENIC
SBS Chr2 18149881 G-T Hetero UTR_3_PRIME
SBS Chr4 32142284 T-A Homo INTRON
SBS Chr4 32142285 C-A Homo INTRON
SBS Chr4 32142286 T-A Homo INTRON
SBS Chr5 21540545 T-G Hetero UTR_5_PRIME
SBS Chr6 4085661 G-A Homo INTERGENIC
SBS Chr6 8017314 C-T Hetero INTRON
SBS Chr6 8017315 A-T Hetero INTRON
SBS Chr7 19650582 C-T Homo INTERGENIC
SBS Chr7 20633972 C-A Hetero INTERGENIC
SBS Chr8 3358664 A-G Homo NON_SYNONYMOUS_CODING OsKitaake08g037700
SBS Chr8 3358668 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g037700
SBS Chr9 8693557 T-G Homo INTERGENIC
SBS Chr9 14041029 G-A Hetero INTERGENIC
SBS Chr10 17630609 G-T Homo INTERGENIC
SBS Chr11 4367571 A-T Hetero INTERGENIC
SBS Chr11 14115437 G-T Hetero INTERGENIC
SBS Chr12 11620375 A-T Homo INTERGENIC
SBS Chr12 21984048 G-A Homo UTR_3_PRIME

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 15154 15155 1
Deletion Chr5 1466839 1466844 5
Deletion Chr10 2811977 2811979 2
Deletion Chr11 3708345 3708352 7 OsKitaake11g051600
Deletion Chr7 9684321 9684325 4
Deletion Chr7 21733049 21733051 2
Deletion Chr12 22853896 22853907 11
Deletion Chr11 25602619 25602624 5
Deletion Chr6 29227858 29227866 8
Deletion Chr6 30271176 30271182 6
Deletion Chr1 31578143 31578150 7 OsKitaake01g317300
Deletion Chr2 35532517 35532519 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23632411 23632414 2
Insertion Chr6 30677758 30677761 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 30542891 30698986

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8873417	T-A	Hetero	INTERGENIC
SBS	Chr1	29041130	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	34876119	C-T	Hetero	INTERGENIC
SBS	Chr1	36673028	G-A	Hetero	INTERGENIC
SBS	Chr2	18149881	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	32142284	T-A	Homo	INTRON
SBS	Chr4	32142285	C-A	Homo	INTRON
SBS	Chr4	32142286	T-A	Homo	INTRON
SBS	Chr5	21540545	T-G	Hetero	UTR_5_PRIME
SBS	Chr6	4085661	G-A	Homo	INTERGENIC
SBS	Chr6	8017314	C-T	Hetero	INTRON
SBS	Chr6	8017315	A-T	Hetero	INTRON
SBS	Chr7	19650582	C-T	Homo	INTERGENIC
SBS	Chr7	20633972	C-A	Hetero	INTERGENIC
SBS	Chr8	3358664	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g037700
SBS	Chr8	3358668	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g037700
SBS	Chr9	8693557	T-G	Homo	INTERGENIC
SBS	Chr9	14041029	G-A	Hetero	INTERGENIC
SBS	Chr10	17630609	G-T	Homo	INTERGENIC
SBS	Chr11	4367571	A-T	Hetero	INTERGENIC
SBS	Chr11	14115437	G-T	Hetero	INTERGENIC
SBS	Chr12	11620375	A-T	Homo	INTERGENIC
SBS	Chr12	21984048	G-A	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	15154	15155	1
Deletion	Chr5	1466839	1466844	5
Deletion	Chr10	2811977	2811979	2
Deletion	Chr11	3708345	3708352	7	OsKitaake11g051600
Deletion	Chr7	9684321	9684325	4
Deletion	Chr7	21733049	21733051	2
Deletion	Chr12	22853896	22853907	11
Deletion	Chr11	25602619	25602624	5
Deletion	Chr6	29227858	29227866	8
Deletion	Chr6	30271176	30271182	6
Deletion	Chr1	31578143	31578150	7	OsKitaake01g317300
Deletion	Chr2	35532517	35532519	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	30542891	30698986

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes