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Mutant Information

Mutant Name	FN1681-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1681-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 16

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31535593 C-T Homo INTERGENIC
SBS Chr3 7973901 T-A Homo INTERGENIC
SBS Chr3 20909248 C-T Homo INTERGENIC
SBS Chr3 22480311 C-T Homo INTERGENIC
SBS Chr4 14565645 G-A Homo INTERGENIC
SBS Chr4 20797171 T-C Homo INTERGENIC
SBS Chr5 978790 A-T Homo INTERGENIC
SBS Chr5 8833866 C-G Homo INTRON
SBS Chr6 1757496 T-C Homo INTERGENIC
SBS Chr6 14264221 C-A Hetero INTERGENIC
SBS Chr6 24934171 C-A Homo INTERGENIC
SBS Chr8 1028242 T-A Hetero INTERGENIC
SBS Chr9 16607440 A-T Homo INTERGENIC
SBS Chr10 22813772 C-A Homo INTERGENIC
SBS Chr11 6800766 T-A Hetero INTRON
SBS Chr11 23098567 A-T Homo INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2238001 2295000 56999 5
Deletion Chr7 5281034 5281038 4
Deletion Chr6 7104823 7104827 4
Deletion Chr11 11943001 11965000 21999
Deletion Chr7 14057182 14057186 4
Deletion Chr8 14889204 14889209 5
Deletion Chr3 19316701 19316702 1
Deletion Chr8 21993477 21993501 24
Deletion Chr11 22188222 22188234 12 OsKitaake11g175500
Deletion Chr10 23803171 23803186 15
Deletion Chr3 30157001 30305000 147999 23

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 230623 230626 2
Insertion Chr1 20981909 20981912 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 11283956 11651687
Inversion Chr5 20412176 20592547 OsKitaake05g164100
Inversion Chr5 20412184 20592547 OsKitaake05g164100

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 3833112 Chr2 15497255 OsKitaake06g052900
Translocation Chr10 8658451 Chr1 17293277 OsKitaake10g053166
Translocation Chr7 22546392 Chr6 3829798 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31535593	C-T	Homo	INTERGENIC
SBS	Chr3	7973901	T-A	Homo	INTERGENIC
SBS	Chr3	20909248	C-T	Homo	INTERGENIC
SBS	Chr3	22480311	C-T	Homo	INTERGENIC
SBS	Chr4	14565645	G-A	Homo	INTERGENIC
SBS	Chr4	20797171	T-C	Homo	INTERGENIC
SBS	Chr5	978790	A-T	Homo	INTERGENIC
SBS	Chr5	8833866	C-G	Homo	INTRON
SBS	Chr6	1757496	T-C	Homo	INTERGENIC
SBS	Chr6	14264221	C-A	Hetero	INTERGENIC
SBS	Chr6	24934171	C-A	Homo	INTERGENIC
SBS	Chr8	1028242	T-A	Hetero	INTERGENIC
SBS	Chr9	16607440	A-T	Homo	INTERGENIC
SBS	Chr10	22813772	C-A	Homo	INTERGENIC
SBS	Chr11	6800766	T-A	Hetero	INTRON
SBS	Chr11	23098567	A-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2238001	2295000	56999	5
Deletion	Chr7	5281034	5281038	4
Deletion	Chr6	7104823	7104827	4
Deletion	Chr11	11943001	11965000	21999
Deletion	Chr7	14057182	14057186	4
Deletion	Chr8	14889204	14889209	5
Deletion	Chr3	19316701	19316702	1
Deletion	Chr8	21993477	21993501	24
Deletion	Chr11	22188222	22188234	12	OsKitaake11g175500
Deletion	Chr10	23803171	23803186	15
Deletion	Chr3	30157001	30305000	147999	23

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	11283956	11651687
Inversion	Chr5	20412176	20592547	OsKitaake05g164100
Inversion	Chr5	20412184	20592547	OsKitaake05g164100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes