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Mutant Information

Mutant Name	FN1684-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1684-S Alignment File
Seed Availability	No
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14979958	C-T	Hetero	INTRON
SBS	Chr1	24480282	C-A	Homo	INTERGENIC
SBS	Chr2	20613473	C-G	Homo	INTERGENIC
SBS	Chr2	30370586	G-A	Hetero	INTERGENIC
SBS	Chr2	31028768	G-T	Hetero	INTERGENIC
SBS	Chr3	3790861	A-T	Hetero	INTERGENIC
SBS	Chr3	4244498	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	740091	C-T	Hetero	INTERGENIC
SBS	Chr4	7963727	C-T	Hetero	INTERGENIC
SBS	Chr4	17776038	G-A	Homo	INTERGENIC
SBS	Chr4	21715913	G-T	Homo	INTERGENIC
SBS	Chr5	3977123	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	8774297	G-T	Hetero	INTERGENIC
SBS	Chr5	8774298	A-T	Hetero	INTERGENIC
SBS	Chr6	22473951	C-T	Hetero	INTERGENIC
SBS	Chr6	27671262	A-C	Homo	UTR_3_PRIME
SBS	Chr6	27671263	G-T	Homo	UTR_3_PRIME
SBS	Chr7	8419644	C-T	Homo	INTRON
SBS	Chr8	9025896	G-C	Homo	INTERGENIC
SBS	Chr8	14747395	A-G	Homo	INTERGENIC
SBS	Chr9	2348305	G-T	Homo	INTERGENIC
SBS	Chr9	10839421	A-G	Hetero	INTRON
SBS	Chr11	24255597	G-A	Hetero	INTERGENIC
SBS	Chr12	24811422	G-T	Homo	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	4119441	4119445	4
Deletion	Chr3	4706255	4706276	21
Deletion	Chr7	4822085	4822089	4	OsKitaake07g059200
Deletion	Chr3	6344958	6344969	11	OsKitaake03g090500
Deletion	Chr5	6658674	6658677	3
Deletion	Chr12	12725353	12725367	14
Deletion	Chr12	13831001	13873000	41999	4
Deletion	Chr1	14903001	14942000	38999	OsKitaake01g142100
Deletion	Chr5	15418922	15418930	8
Deletion	Chr2	17485900	17485903	3
Deletion	Chr2	20613497	20613506	9
Deletion	Chr3	28245663	28245666	3
Deletion	Chr3	30474958	30474959	1	OsKitaake03g319800

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr9	14638011	14638014	2
Insertion	Chr10	19774670	19774673	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2349188	Chr1	2620303	OsKitaake01g033300
Translocation	Chr9	2351017	Chr1	2620307	OsKitaake01g033300