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Mutant Information

Mutant Name	FN1685-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1685-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5562621 G-A Hetero INTERGENIC
SBS Chr1 5562622 C-A Hetero INTERGENIC
SBS Chr1 34274627 T-G Hetero INTERGENIC
SBS Chr2 8360113 G-A Hetero UTR_3_PRIME
SBS Chr2 30460135 G-T Hetero INTERGENIC
SBS Chr2 31476681 G-A Homo INTERGENIC
SBS Chr3 17336341 A-G Hetero INTERGENIC
SBS Chr3 31722370 A-G Hetero INTRON
SBS Chr3 36830282 A-T Hetero INTERGENIC
SBS Chr4 2113960 C-T Hetero INTERGENIC
SBS Chr4 16259199 A-G Hetero INTERGENIC
SBS Chr4 25171417 G-C Hetero INTERGENIC
SBS Chr4 34818780 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g291400
SBS Chr5 3713694 T-C Hetero INTERGENIC
SBS Chr5 11243045 A-G Hetero INTERGENIC
SBS Chr6 18806565 C-T Hetero INTERGENIC
SBS Chr6 20232300 C-T Hetero INTERGENIC
SBS Chr6 27672141 A-C Hetero UTR_5_PRIME
SBS Chr6 27800618 A-G Hetero SPLICE_SITE_REGION
SBS Chr6 28049565 G-A Hetero INTERGENIC
SBS Chr6 29462197 C-T Hetero INTERGENIC
SBS Chr7 4771483 G-T Hetero INTERGENIC
SBS Chr7 8025819 C-T Hetero INTERGENIC
SBS Chr7 16615782 C-T Hetero INTERGENIC
SBS Chr7 23775219 T-C Hetero INTRON
SBS Chr7 27535400 A-T Hetero INTERGENIC
SBS Chr7 29136358 T-A Hetero INTERGENIC
SBS Chr8 139486 A-T Hetero INTERGENIC
SBS Chr8 25850025 C-A Hetero INTERGENIC
SBS Chr9 7194702 C-T Hetero INTERGENIC
SBS Chr11 23990066 T-C Hetero INTERGENIC
SBS Chr12 1642938 G-A Hetero INTERGENIC
SBS Chr12 3995166 G-A Hetero INTERGENIC
SBS Chr12 10922269 C-G Hetero INTERGENIC
SBS Chr12 16427789 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 623894 623900 6
Deletion Chr10 636515 636525 10
Deletion Chr7 1435001 1480000 44999 3
Deletion Chr10 1893667 1893670 3
Deletion Chr3 2716442 2716449 7
Deletion Chr9 2737607 2737608 1
Deletion Chr4 7513001 8173000 659999 43
Deletion Chr10 10392697 10392702 5
Deletion Chr7 10928174 10928179 5
Deletion Chr5 15138072 15138076 4
Deletion Chr4 18247940 18247941 1
Deletion Chr8 22134411 22134418 7
Deletion Chr5 23231790 23231793 3
Deletion Chr3 25862452 25862453 1
Deletion Chr2 25957868 25957874 6 OsKitaake02g256300
Deletion Chr3 30135305 30135306 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 15074681 15074684 2
Insertion Chr5 22286863 22286866 2
Insertion Chr10 18772508 18772511 2
Insertion Chr11 16338087 16338090 2
Insertion Chr11 26239827 26239830 2
Insertion Chr1 14631562 14631614 51
Insertion Chr11 10407932 10407935 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 31312957 31771105
Inversion Chr1 31312986 31771284

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13598319 Chr6 22810563
Translocation Chr10 13598355 Chr6 22774842
Translocation Chr10 19675905 Chr7 27131445 OsKitaake07g254000
Translocation Chr10 19680509 Chr7 27131447 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5562621	G-A	Hetero	INTERGENIC
SBS	Chr1	5562622	C-A	Hetero	INTERGENIC
SBS	Chr1	34274627	T-G	Hetero	INTERGENIC
SBS	Chr2	8360113	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	30460135	G-T	Hetero	INTERGENIC
SBS	Chr2	31476681	G-A	Homo	INTERGENIC
SBS	Chr3	17336341	A-G	Hetero	INTERGENIC
SBS	Chr3	31722370	A-G	Hetero	INTRON
SBS	Chr3	36830282	A-T	Hetero	INTERGENIC
SBS	Chr4	2113960	C-T	Hetero	INTERGENIC
SBS	Chr4	16259199	A-G	Hetero	INTERGENIC
SBS	Chr4	25171417	G-C	Hetero	INTERGENIC
SBS	Chr4	34818780	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g291400
SBS	Chr5	3713694	T-C	Hetero	INTERGENIC
SBS	Chr5	11243045	A-G	Hetero	INTERGENIC
SBS	Chr6	18806565	C-T	Hetero	INTERGENIC
SBS	Chr6	20232300	C-T	Hetero	INTERGENIC
SBS	Chr6	27672141	A-C	Hetero	UTR_5_PRIME
SBS	Chr6	27800618	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr6	28049565	G-A	Hetero	INTERGENIC
SBS	Chr6	29462197	C-T	Hetero	INTERGENIC
SBS	Chr7	4771483	G-T	Hetero	INTERGENIC
SBS	Chr7	8025819	C-T	Hetero	INTERGENIC
SBS	Chr7	16615782	C-T	Hetero	INTERGENIC
SBS	Chr7	23775219	T-C	Hetero	INTRON
SBS	Chr7	27535400	A-T	Hetero	INTERGENIC
SBS	Chr7	29136358	T-A	Hetero	INTERGENIC
SBS	Chr8	139486	A-T	Hetero	INTERGENIC
SBS	Chr8	25850025	C-A	Hetero	INTERGENIC
SBS	Chr9	7194702	C-T	Hetero	INTERGENIC
SBS	Chr11	23990066	T-C	Hetero	INTERGENIC
SBS	Chr12	1642938	G-A	Hetero	INTERGENIC
SBS	Chr12	3995166	G-A	Hetero	INTERGENIC
SBS	Chr12	10922269	C-G	Hetero	INTERGENIC
SBS	Chr12	16427789	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	623894	623900	6
Deletion	Chr10	636515	636525	10
Deletion	Chr7	1435001	1480000	44999	3
Deletion	Chr10	1893667	1893670	3
Deletion	Chr3	2716442	2716449	7
Deletion	Chr9	2737607	2737608	1
Deletion	Chr4	7513001	8173000	659999	43
Deletion	Chr10	10392697	10392702	5
Deletion	Chr7	10928174	10928179	5
Deletion	Chr5	15138072	15138076	4
Deletion	Chr4	18247940	18247941	1
Deletion	Chr8	22134411	22134418	7
Deletion	Chr5	23231790	23231793	3
Deletion	Chr3	25862452	25862453	1
Deletion	Chr2	25957868	25957874	6	OsKitaake02g256300
Deletion	Chr3	30135305	30135306	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	31312957	31771105
Inversion	Chr1	31312986	31771284

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes