Search Kitaake

Mutant Information

Mutant Name	FN1687-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1687-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 43506776 G-T Hetero INTERGENIC
SBS Chr2 20125269 T-C Hetero INTERGENIC
SBS Chr2 23017834 T-A Hetero INTERGENIC
SBS Chr2 23017835 C-A Hetero INTERGENIC
SBS Chr3 15298213 C-T Hetero INTERGENIC
SBS Chr3 20567942 G-A Hetero INTERGENIC
SBS Chr3 30745644 G-A Homo INTERGENIC
SBS Chr4 17614377 A-G Hetero INTERGENIC
SBS Chr5 2130985 T-C Hetero SYNONYMOUS_CODING
SBS Chr5 6404080 A-G Hetero INTERGENIC
SBS Chr6 7535393 A-G Homo INTRON
SBS Chr6 22562706 T-A Homo INTERGENIC
SBS Chr7 4151645 C-T Hetero INTERGENIC
SBS Chr7 6166867 T-C Hetero INTERGENIC
SBS Chr8 3047032 C-G Hetero INTERGENIC
SBS Chr8 24104894 A-T Hetero INTERGENIC
SBS Chr9 8479877 T-C Hetero INTERGENIC
SBS Chr9 10798841 G-C Homo INTERGENIC
SBS Chr10 9512673 G-C Hetero INTERGENIC
SBS Chr10 14886121 T-A Hetero INTERGENIC
SBS Chr10 15733513 G-T Hetero INTERGENIC
SBS Chr10 23143384 T-C Hetero INTRON
SBS Chr11 4559189 G-A Hetero INTRON
SBS Chr11 5126854 C-T Hetero INTERGENIC
SBS Chr11 8234264 G-A Hetero INTERGENIC
SBS Chr12 8169945 C-T Hetero INTERGENIC
SBS Chr12 14176932 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2559685 2559690 5
Deletion Chr9 3333494 3333495 1
Deletion Chr8 3461666 3461671 5
Deletion Chr8 3808361 3808363 2
Deletion Chr8 3957027 3957032 5
Deletion Chr2 6392001 6428000 35999 5
Deletion Chr4 6891705 6891714 9
Deletion Chr7 9134001 9222000 87999 6
Deletion Chr7 11299001 11321000 21999 OsKitaake07g106000
Deletion Chr8 20002833 20002834 1
Deletion Chr8 21175033 21175041 8
Deletion Chr11 21499186 21499187 1
Deletion Chr10 22139713 22139714 1
Deletion Chr3 26735346 26735348 2
Deletion Chr4 31075322 31075332 10

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 1776646 1776648 1
Insertion Chr8 9901337 9901340 2
Insertion Chr10 15221918 15221922 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 7867170 7880872
Inversion Chr12 7867173 7880871
Inversion Chr7 11097333 11299722 OsKitaake07g104400
Inversion Chr7 11097349 11318968 OsKitaake07g104400

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7317508 Chr3 29180982
Translocation Chr12 7317875 Chr3 29181046
Translocation Chr12 7818214 Chr8 17095962 OsKitaake12g083800
Translocation Chr7 11299733 Chr2 25909376
Translocation Chr7 11299845 Chr2 25909447

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	43506776	G-T	Hetero	INTERGENIC
SBS	Chr2	20125269	T-C	Hetero	INTERGENIC
SBS	Chr2	23017834	T-A	Hetero	INTERGENIC
SBS	Chr2	23017835	C-A	Hetero	INTERGENIC
SBS	Chr3	15298213	C-T	Hetero	INTERGENIC
SBS	Chr3	20567942	G-A	Hetero	INTERGENIC
SBS	Chr3	30745644	G-A	Homo	INTERGENIC
SBS	Chr4	17614377	A-G	Hetero	INTERGENIC
SBS	Chr5	2130985	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	6404080	A-G	Hetero	INTERGENIC
SBS	Chr6	7535393	A-G	Homo	INTRON
SBS	Chr6	22562706	T-A	Homo	INTERGENIC
SBS	Chr7	4151645	C-T	Hetero	INTERGENIC
SBS	Chr7	6166867	T-C	Hetero	INTERGENIC
SBS	Chr8	3047032	C-G	Hetero	INTERGENIC
SBS	Chr8	24104894	A-T	Hetero	INTERGENIC
SBS	Chr9	8479877	T-C	Hetero	INTERGENIC
SBS	Chr9	10798841	G-C	Homo	INTERGENIC
SBS	Chr10	9512673	G-C	Hetero	INTERGENIC
SBS	Chr10	14886121	T-A	Hetero	INTERGENIC
SBS	Chr10	15733513	G-T	Hetero	INTERGENIC
SBS	Chr10	23143384	T-C	Hetero	INTRON
SBS	Chr11	4559189	G-A	Hetero	INTRON
SBS	Chr11	5126854	C-T	Hetero	INTERGENIC
SBS	Chr11	8234264	G-A	Hetero	INTERGENIC
SBS	Chr12	8169945	C-T	Hetero	INTERGENIC
SBS	Chr12	14176932	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2559685	2559690	5
Deletion	Chr9	3333494	3333495	1
Deletion	Chr8	3461666	3461671	5
Deletion	Chr8	3808361	3808363	2
Deletion	Chr8	3957027	3957032	5
Deletion	Chr2	6392001	6428000	35999	5
Deletion	Chr4	6891705	6891714	9
Deletion	Chr7	9134001	9222000	87999	6
Deletion	Chr7	11299001	11321000	21999	OsKitaake07g106000
Deletion	Chr8	20002833	20002834	1
Deletion	Chr8	21175033	21175041	8
Deletion	Chr11	21499186	21499187	1
Deletion	Chr10	22139713	22139714	1
Deletion	Chr3	26735346	26735348	2
Deletion	Chr4	31075322	31075332	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7867170	7880872
Inversion	Chr12	7867173	7880871
Inversion	Chr7	11097333	11299722	OsKitaake07g104400
Inversion	Chr7	11097349	11318968	OsKitaake07g104400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes