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Mutant Information

Mutant Name	FN1688-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1688-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 753438 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g007400
SBS Chr2 5448561 C-T Hetero INTRON
SBS Chr2 17906131 G-A Homo INTERGENIC
SBS Chr2 33763314 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g349200
SBS Chr3 26940056 C-T Homo INTERGENIC
SBS Chr4 12078354 T-A Hetero UTR_5_PRIME
SBS Chr4 17110891 C-A Hetero INTERGENIC
SBS Chr4 17940233 G-A Homo INTERGENIC
SBS Chr4 24297848 C-A Hetero INTRON
SBS Chr4 34686267 T-C Hetero INTERGENIC
SBS Chr5 23811176 G-A Hetero INTERGENIC
SBS Chr6 10167475 G-T Hetero INTERGENIC
SBS Chr6 19455335 T-A Homo INTERGENIC
SBS Chr6 27643161 A-T Hetero INTERGENIC
SBS Chr6 27648594 G-C Hetero INTERGENIC
SBS Chr6 30910651 G-C Hetero INTERGENIC
SBS Chr7 9793158 C-T Hetero INTERGENIC
SBS Chr7 15910040 G-A Homo INTERGENIC
SBS Chr8 639614 A-T Homo INTRON
SBS Chr9 8851245 G-C Homo INTERGENIC
SBS Chr10 4185783 G-T Homo INTERGENIC
SBS Chr10 13106591 C-G Homo INTERGENIC
SBS Chr11 2931399 G-A Hetero INTERGENIC
SBS Chr11 4893827 C-A Hetero INTERGENIC
SBS Chr11 5465549 C-G Hetero UTR_5_PRIME
SBS Chr11 5465550 T-A Hetero UTR_5_PRIME
SBS Chr11 10988746 G-A Homo INTERGENIC
SBS Chr11 11481069 T-A Hetero INTERGENIC
SBS Chr11 11481070 C-A Hetero INTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 8540025 8540026 1
Deletion Chr3 8664910 8664911 1
Deletion Chr9 21476143 21476146 3
Deletion Chr5 23268781 23268783 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 23355941 23355944 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 3566365 Chr2 9135539 2
Translocation Chr5 3566368 Chr2 9132034 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	753438	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g007400
SBS	Chr2	5448561	C-T	Hetero	INTRON
SBS	Chr2	17906131	G-A	Homo	INTERGENIC
SBS	Chr2	33763314	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g349200
SBS	Chr3	26940056	C-T	Homo	INTERGENIC
SBS	Chr4	12078354	T-A	Hetero	UTR_5_PRIME
SBS	Chr4	17110891	C-A	Hetero	INTERGENIC
SBS	Chr4	17940233	G-A	Homo	INTERGENIC
SBS	Chr4	24297848	C-A	Hetero	INTRON
SBS	Chr4	34686267	T-C	Hetero	INTERGENIC
SBS	Chr5	23811176	G-A	Hetero	INTERGENIC
SBS	Chr6	10167475	G-T	Hetero	INTERGENIC
SBS	Chr6	19455335	T-A	Homo	INTERGENIC
SBS	Chr6	27643161	A-T	Hetero	INTERGENIC
SBS	Chr6	27648594	G-C	Hetero	INTERGENIC
SBS	Chr6	30910651	G-C	Hetero	INTERGENIC
SBS	Chr7	9793158	C-T	Hetero	INTERGENIC
SBS	Chr7	15910040	G-A	Homo	INTERGENIC
SBS	Chr8	639614	A-T	Homo	INTRON
SBS	Chr9	8851245	G-C	Homo	INTERGENIC
SBS	Chr10	4185783	G-T	Homo	INTERGENIC
SBS	Chr10	13106591	C-G	Homo	INTERGENIC
SBS	Chr11	2931399	G-A	Hetero	INTERGENIC
SBS	Chr11	4893827	C-A	Hetero	INTERGENIC
SBS	Chr11	5465549	C-G	Hetero	UTR_5_PRIME
SBS	Chr11	5465550	T-A	Hetero	UTR_5_PRIME
SBS	Chr11	10988746	G-A	Homo	INTERGENIC
SBS	Chr11	11481069	T-A	Hetero	INTERGENIC
SBS	Chr11	11481070	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	8540025	8540026	1
Deletion	Chr3	8664910	8664911	1
Deletion	Chr9	21476143	21476146	3
Deletion	Chr5	23268781	23268783	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3566365	Chr2	9135539	2
Translocation	Chr5	3566368	Chr2	9132034	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes