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| Mutant Information |
|---|
| Mutant Name | FN1689-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1689-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 3390589 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g048900 |
| SBS | Chr3 | 8013315 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8013317 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24805639 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 24405582 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 35091850 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g294600 |
| SBS | Chr5 | 5939010 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 26659752 | A-G | Homo | INTRON | |
| SBS | Chr6 | 9098772 | A-T | Homo | INTRON | |
| SBS | Chr6 | 10474604 | G-C | Homo | INTRON | |
| SBS | Chr6 | 12867252 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 18595077 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 27743146 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 7101916 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 12536969 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 22032114 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26788852 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 9023869 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 14023937 | A-G | Hetero | INTRON | |
| SBS | Chr10 | 706520 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1363519 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5650339 | T-G | Hetero | INTRON | |
| SBS | Chr11 | 17751305 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25503654 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25696877 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 13868598 | G-T | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 9897184 | 9897185 | 1 | |
| Deletion | Chr9 | 14053567 | 14053605 | 38 | |
| Deletion | Chr6 | 23665607 | 23665610 | 3 | |
| Deletion | Chr11 | 27400200 | 27400201 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 9650240 | 9650244 | 3 | |
| Insertion | Chr5 | 22285934 | 22285936 | 1 | |
| Insertion | Chr5 | 25054824 | 25054827 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 21047125 | 21521025 | |
| Inversion | Chr12 | 21047128 | 21521026 | |
| Inversion | Chr2 | 26822244 | 26867819 | OsKitaake02g268200 |
| Inversion | Chr2 | 26822247 | 26867819 | OsKitaake02g268200 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 26867818 | Chr1 | 15709035 | OsKitaake02g268200 |
| Translocation | Chr2 | 36925700 | Chr1 | 15708646 | |
| Translocation | Chr2 | 36925708 | Chr1 | 15708162 |