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Mutant Information

Mutant Name	FN1690-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1690-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (6.67% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24263474 A-G Hetero INTRON
SBS Chr2 5600979 A-T Hetero INTERGENIC
SBS Chr2 7326321 A-G Hetero INTERGENIC
SBS Chr2 9294130 C-T Hetero INTERGENIC
SBS Chr2 10863623 T-C Hetero INTERGENIC
SBS Chr2 17936249 G-A Hetero INTERGENIC
SBS Chr2 33473054 T-C Hetero INTRON
SBS Chr3 9487237 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g128700
SBS Chr3 10408532 G-T Hetero SYNONYMOUS_CODING
SBS Chr3 24605936 G-A Hetero INTERGENIC
SBS Chr4 5182128 T-C Hetero INTERGENIC
SBS Chr4 20601688 A-C Hetero INTERGENIC
SBS Chr4 26178555 T-C Hetero INTERGENIC
SBS Chr5 23900312 G-A Hetero INTERGENIC
SBS Chr5 30029925 T-G Hetero INTERGENIC
SBS Chr6 9771701 C-T Hetero INTERGENIC
SBS Chr6 14208915 T-G Hetero INTERGENIC
SBS Chr7 12965278 G-A Hetero INTERGENIC
SBS Chr7 15335428 C-T Homo INTERGENIC
SBS Chr7 25842681 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 17068697 A-T Hetero UTR_3_PRIME
SBS Chr11 14973970 T-C Hetero INTERGENIC
SBS Chr11 23673064 A-T Hetero INTERGENIC
SBS Chr12 2276496 G-T Hetero UTR_3_PRIME
SBS Chr12 8750688 C-T Hetero INTERGENIC
SBS Chr12 12867719 T-A Hetero INTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4048604 4048606 2
Deletion Chr11 20138634 20138731 97
Deletion Chr6 23656001 23687000 30999 3
Deletion Chr3 29236342 29236343 1 OsKitaake03g304100

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 5186560 5186563 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 2447329 3444973 OsKitaake01g030900
Inversion Chr7 12835347 13302482 2
Inversion Chr7 12835359 13306833 2
Inversion Chr7 21630551 21741735 OsKitaake07g182600
Inversion Chr7 21630596 21741743 OsKitaake07g182600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 6802376 Chr3 36311250 OsKitaake03g402700
Translocation Chr4 6803658 Chr3 36311255 OsKitaake03g402700
Translocation Chr10 17217664 Chr6 23689236 OsKitaake06g208600
Translocation Chr11 18537195 Chr4 21740446 OsKitaake04g123900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24263474	A-G	Hetero	INTRON
SBS	Chr2	5600979	A-T	Hetero	INTERGENIC
SBS	Chr2	7326321	A-G	Hetero	INTERGENIC
SBS	Chr2	9294130	C-T	Hetero	INTERGENIC
SBS	Chr2	10863623	T-C	Hetero	INTERGENIC
SBS	Chr2	17936249	G-A	Hetero	INTERGENIC
SBS	Chr2	33473054	T-C	Hetero	INTRON
SBS	Chr3	9487237	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g128700
SBS	Chr3	10408532	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	24605936	G-A	Hetero	INTERGENIC
SBS	Chr4	5182128	T-C	Hetero	INTERGENIC
SBS	Chr4	20601688	A-C	Hetero	INTERGENIC
SBS	Chr4	26178555	T-C	Hetero	INTERGENIC
SBS	Chr5	23900312	G-A	Hetero	INTERGENIC
SBS	Chr5	30029925	T-G	Hetero	INTERGENIC
SBS	Chr6	9771701	C-T	Hetero	INTERGENIC
SBS	Chr6	14208915	T-G	Hetero	INTERGENIC
SBS	Chr7	12965278	G-A	Hetero	INTERGENIC
SBS	Chr7	15335428	C-T	Homo	INTERGENIC
SBS	Chr7	25842681	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	17068697	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	14973970	T-C	Hetero	INTERGENIC
SBS	Chr11	23673064	A-T	Hetero	INTERGENIC
SBS	Chr12	2276496	G-T	Hetero	UTR_3_PRIME
SBS	Chr12	8750688	C-T	Hetero	INTERGENIC
SBS	Chr12	12867719	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4048604	4048606	2
Deletion	Chr11	20138634	20138731	97
Deletion	Chr6	23656001	23687000	30999	3
Deletion	Chr3	29236342	29236343	1	OsKitaake03g304100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2447329	3444973	OsKitaake01g030900
Inversion	Chr7	12835347	13302482	2
Inversion	Chr7	12835359	13306833	2
Inversion	Chr7	21630551	21741735	OsKitaake07g182600
Inversion	Chr7	21630596	21741743	OsKitaake07g182600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes