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Mutant Information

Mutant Name	FN1692-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1692-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8817658 G-A Hetero INTERGENIC
SBS Chr1 22754295 C-G Homo INTERGENIC
SBS Chr1 26809116 A-T Homo INTRON
SBS Chr1 27707698 T-C Homo INTERGENIC
SBS Chr1 34974165 C-G Homo INTERGENIC
SBS Chr1 38480170 T-C Hetero INTERGENIC
SBS Chr1 41517468 C-A Homo INTERGENIC
SBS Chr2 1807707 G-T Hetero START_GAINED
SBS Chr2 6813089 C-T Hetero INTRON
SBS Chr3 37079661 T-A Hetero INTRON
SBS Chr4 6174285 G-T Homo INTERGENIC
SBS Chr4 6174286 T-C Homo INTERGENIC
SBS Chr4 15751616 T-C Hetero INTERGENIC
SBS Chr4 36226304 T-C Homo INTERGENIC
SBS Chr5 16465678 A-G Homo INTERGENIC
SBS Chr6 11008764 C-G Hetero INTERGENIC
SBS Chr6 29246320 G-A Homo SYNONYMOUS_CODING
SBS Chr7 14136028 G-A Hetero INTERGENIC
SBS Chr7 18512198 A-C Hetero INTRON
SBS Chr7 20950745 G-A Hetero INTRON
SBS Chr8 13020816 T-G Hetero INTERGENIC
SBS Chr8 17095102 G-A Hetero INTERGENIC
SBS Chr9 7838146 T-G Homo INTERGENIC
SBS Chr10 9472799 A-G Homo INTERGENIC
SBS Chr10 22235287 G-A Hetero INTRON
SBS Chr11 10606907 G-A Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4100876 4100881 5
Deletion Chr5 4173273 4173282 9
Deletion Chr1 4388871 4388874 3 OsKitaake01g058300
Deletion Chr4 7995741 7995742 1
Deletion Chr7 9116001 9585000 468999 25
Deletion Chr4 9279057 9279060 3
Deletion Chr1 10133091 10133092 1
Deletion Chr5 14893039 14893041 2
Deletion Chr7 18196073 18196074 1
Deletion Chr9 18762113 18762114 1
Deletion Chr4 30265010 30265021 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5510289 5510292 2
Insertion Chr9 18890762 18890764 1

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 9583212 Chr5 22958030 OsKitaake05g190600
Translocation Chr7 9583393 Chr5 22948910
Translocation Chr12 13290339 Chr2 28429821
Translocation Chr12 13290342 Chr2 28437259
Translocation Chr9 20623465 Chr2 25288905
Translocation Chr5 22948937 Chr2 26601916
Translocation Chr5 22957985 Chr2 37043139 OsKitaake05g190600
Translocation Chr5 23906113 Chr1 26422454 OsKitaake01g257300
Translocation Chr5 23915396 Chr1 26422461 OsKitaake01g257300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8817658	G-A	Hetero	INTERGENIC
SBS	Chr1	22754295	C-G	Homo	INTERGENIC
SBS	Chr1	26809116	A-T	Homo	INTRON
SBS	Chr1	27707698	T-C	Homo	INTERGENIC
SBS	Chr1	34974165	C-G	Homo	INTERGENIC
SBS	Chr1	38480170	T-C	Hetero	INTERGENIC
SBS	Chr1	41517468	C-A	Homo	INTERGENIC
SBS	Chr2	1807707	G-T	Hetero	START_GAINED
SBS	Chr2	6813089	C-T	Hetero	INTRON
SBS	Chr3	37079661	T-A	Hetero	INTRON
SBS	Chr4	6174285	G-T	Homo	INTERGENIC
SBS	Chr4	6174286	T-C	Homo	INTERGENIC
SBS	Chr4	15751616	T-C	Hetero	INTERGENIC
SBS	Chr4	36226304	T-C	Homo	INTERGENIC
SBS	Chr5	16465678	A-G	Homo	INTERGENIC
SBS	Chr6	11008764	C-G	Hetero	INTERGENIC
SBS	Chr6	29246320	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	14136028	G-A	Hetero	INTERGENIC
SBS	Chr7	18512198	A-C	Hetero	INTRON
SBS	Chr7	20950745	G-A	Hetero	INTRON
SBS	Chr8	13020816	T-G	Hetero	INTERGENIC
SBS	Chr8	17095102	G-A	Hetero	INTERGENIC
SBS	Chr9	7838146	T-G	Homo	INTERGENIC
SBS	Chr10	9472799	A-G	Homo	INTERGENIC
SBS	Chr10	22235287	G-A	Hetero	INTRON
SBS	Chr11	10606907	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4100876	4100881	5
Deletion	Chr5	4173273	4173282	9
Deletion	Chr1	4388871	4388874	3	OsKitaake01g058300
Deletion	Chr4	7995741	7995742	1
Deletion	Chr7	9116001	9585000	468999	25
Deletion	Chr4	9279057	9279060	3
Deletion	Chr1	10133091	10133092	1
Deletion	Chr5	14893039	14893041	2
Deletion	Chr7	18196073	18196074	1
Deletion	Chr9	18762113	18762114	1
Deletion	Chr4	30265010	30265021	11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	9583212	Chr5	22958030	OsKitaake05g190600
Translocation	Chr7	9583393	Chr5	22948910
Translocation	Chr12	13290339	Chr2	28429821
Translocation	Chr12	13290342	Chr2	28437259
Translocation	Chr9	20623465	Chr2	25288905
Translocation	Chr5	22948937	Chr2	26601916
Translocation	Chr5	22957985	Chr2	37043139	OsKitaake05g190600
Translocation	Chr5	23906113	Chr1	26422454	OsKitaake01g257300
Translocation	Chr5	23915396	Chr1	26422461	OsKitaake01g257300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes