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Mutant Information

Mutant Name	FN1693-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1693-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21680086 C-T Homo SYNONYMOUS_CODING
SBS Chr1 24568343 A-T Homo INTERGENIC
SBS Chr2 6273438 G-A Hetero INTERGENIC
SBS Chr3 5995611 C-T Homo INTERGENIC
SBS Chr3 12111593 G-A Homo INTERGENIC
SBS Chr3 35323447 G-A Homo INTERGENIC
SBS Chr3 35402671 G-A Homo INTERGENIC
SBS Chr3 35402673 A-T Homo INTERGENIC
SBS Chr4 11407530 A-T Homo INTERGENIC
SBS Chr4 13540474 C-A Homo INTERGENIC
SBS Chr4 17852443 T-G Hetero INTERGENIC
SBS Chr4 18541817 T-G Hetero INTERGENIC
SBS Chr5 10188109 G-A Homo INTERGENIC
SBS Chr5 20833203 C-T Homo START_GAINED
SBS Chr6 24234736 A-T Homo INTERGENIC
SBS Chr8 2833170 C-T Homo INTERGENIC
SBS Chr8 8296660 A-G Hetero INTERGENIC
SBS Chr8 13570254 T-C Homo INTERGENIC
SBS Chr8 13709127 T-G Hetero INTERGENIC
SBS Chr8 13709136 G-T Homo INTERGENIC
SBS Chr8 23557278 T-A Hetero INTERGENIC
SBS Chr11 16998377 G-A Homo INTERGENIC
SBS Chr12 11831755 C-T Hetero INTERGENIC
SBS Chr12 26796927 A-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 152666 152667 1
Deletion Chr2 3701093 3701094 1
Deletion Chr9 4220092 4220094 2
Deletion Chr8 5072790 5073158 368
Deletion Chr1 6781670 6781676 6
Deletion Chr1 9638001 9660000 21999 2
Deletion Chr4 12440001 12493000 52999 OsKitaake04g060266
Deletion Chr1 17822761 17822765 4
Deletion Chr3 21002120 21002125 5
Deletion Chr4 21811411 21811412 1 OsKitaake04g125000
Deletion Chr4 29305148 29305163 15
Deletion Chr4 34756945 34756947 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 985682 985687 4
Insertion Chr7 4036415 4036418 2
Insertion Chr11 1842027 1842030 2
Insertion Chr4 33669529 33669532 2 OsKitaake04g279200
Insertion Chr6 53662 53664 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 13710132 14559766 OsKitaake08g114300
Inversion Chr10 15415420 15861118 OsKitaake10g103400
Inversion Chr10 15415423 15861120 OsKitaake10g103400
Inversion Chr2 30822849 30868942 OsKitaake02g314200
Inversion Chr2 30918426 30925767

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 10771073 Chr2 31428507 OsKitaake02g321816
Translocation Chr10 13621380 Chr2 31428508 OsKitaake02g321816

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21680086	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	24568343	A-T	Homo	INTERGENIC
SBS	Chr2	6273438	G-A	Hetero	INTERGENIC
SBS	Chr3	5995611	C-T	Homo	INTERGENIC
SBS	Chr3	12111593	G-A	Homo	INTERGENIC
SBS	Chr3	35323447	G-A	Homo	INTERGENIC
SBS	Chr3	35402671	G-A	Homo	INTERGENIC
SBS	Chr3	35402673	A-T	Homo	INTERGENIC
SBS	Chr4	11407530	A-T	Homo	INTERGENIC
SBS	Chr4	13540474	C-A	Homo	INTERGENIC
SBS	Chr4	17852443	T-G	Hetero	INTERGENIC
SBS	Chr4	18541817	T-G	Hetero	INTERGENIC
SBS	Chr5	10188109	G-A	Homo	INTERGENIC
SBS	Chr5	20833203	C-T	Homo	START_GAINED
SBS	Chr6	24234736	A-T	Homo	INTERGENIC
SBS	Chr8	2833170	C-T	Homo	INTERGENIC
SBS	Chr8	8296660	A-G	Hetero	INTERGENIC
SBS	Chr8	13570254	T-C	Homo	INTERGENIC
SBS	Chr8	13709127	T-G	Hetero	INTERGENIC
SBS	Chr8	13709136	G-T	Homo	INTERGENIC
SBS	Chr8	23557278	T-A	Hetero	INTERGENIC
SBS	Chr11	16998377	G-A	Homo	INTERGENIC
SBS	Chr12	11831755	C-T	Hetero	INTERGENIC
SBS	Chr12	26796927	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	152666	152667	1
Deletion	Chr2	3701093	3701094	1
Deletion	Chr9	4220092	4220094	2
Deletion	Chr8	5072790	5073158	368
Deletion	Chr1	6781670	6781676	6
Deletion	Chr1	9638001	9660000	21999	2
Deletion	Chr4	12440001	12493000	52999	OsKitaake04g060266
Deletion	Chr1	17822761	17822765	4
Deletion	Chr3	21002120	21002125	5
Deletion	Chr4	21811411	21811412	1	OsKitaake04g125000
Deletion	Chr4	29305148	29305163	15
Deletion	Chr4	34756945	34756947	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	13710132	14559766	OsKitaake08g114300
Inversion	Chr10	15415420	15861118	OsKitaake10g103400
Inversion	Chr10	15415423	15861120	OsKitaake10g103400
Inversion	Chr2	30822849	30868942	OsKitaake02g314200
Inversion	Chr2	30918426	30925767

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes